Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28640 125 / 1e-35 ATGIF1, GIF1, AN3 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) AT4G00850 84 / 2e-19 GIF3 GRF1-interacting factor 3 (.1) AT1G01160 74 / 8e-16 GIF2 GRF1-interacting factor 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005524 [exp] 218 / 7e-72 AT5G28640 152 / 2e-46 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Lus10032892 [exp] 86 / 2e-20 AT4G00850 185 / 3e-59 GRF1-interacting factor 3 (.1) Lus10027132 [exp] 84 / 3e-20 AT4G00850 148 / 7e-46 GRF1-interacting factor 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G013100 [exp] 150 / 4e-45 AT5G28640 135 / 1e-39 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Potri.013G043700 [exp] 147 / 5e-44 AT5G28640 134 / 4e-39 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Potri.014G103900 [exp] 86 / 2e-20 AT4G00850 132 / 3e-38 GRF1-interacting factor 3 (.1) Potri.002G177600 [exp] 81 / 1e-18 AT4G00850 152 / 4e-46 GRF1-interacting factor 3 (.1) Potri.012G023100 [exp] 72 / 1e-15 AT4G00850 90 / 6e-23 GRF1-interacting factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05030 [flax] [poplar] SSXT SSXT protein (N-terminal region)
Representative CDS sequence Show only first row Show all	>Lus10006568 pacid=23149196 polypeptide=Lus10006568 locus=Lus10006568.g ID=Lus10006568.BGIv1.0 annot-version=v1.0 ATGATCATCTTAACATCATTTGATTCTGCCTCGTGTTTCAGACTTGTTCAATTCAGTTCCGAGTCTTACACTGTGATGCTTAATGTTTGCAATTGCTGGT TTGTTCCTCCCCATGTACTTCAGTATCTGGATGAGAATAAGTCTTTGATCTTGAAGATCGTTGAGAGTCAGAACTCAGGAAAACTCAGTGAGTGTGCAGA GAACCAAGCGAGGCTTCAGCGTAACCTTATGTACTTGGCCGCGATTGCTGATTCTCAACCTCAACCACCAGCTCTGCACTCCCAGTACCAATCAAGTGGG ATGATGCAGCCAGGGATGCACTATATGCAGCAACAGCAGATGACACAGCAGTCCCTGATGGCAGCCAGGTCATCAATGATGTACAGTCAGCAGCCATACG CAGCCCTCCAGCAGCAGGCAGCCATGAACAGCCAGGCTGCCATGAACAGCCAGCTGGGGATGAGTGGAGGAGGTGGAGGAGGAAGTACATCAGGGCTCCA CATGCTACAAAGCGATTCGAGCGGTGGTGGAGGAGGCAGCAGTGGTGGACACCTTGGCTTTCCAGACTTCAGCAGCAGGGATGGCAGGGAAATGGGGAGC AGCAAGCAAGAGATGGGGAGTGGTGGAGGGTCGAGTGATGCTCGAGGAGGGAGCTCTGGTGGTGGTGGAGATGGTGGGGAGACTCTTTACTTGAAATCCA ATGATGATGGGAACTAG
AA sequence Show only first row Show all	>Lus10006568 pacid=23149196 polypeptide=Lus10006568 locus=Lus10006568.g ID=Lus10006568.BGIv1.0 annot-version=v1.0 MIILTSFDSASCFRLVQFSSESYTVMLNVCNCWFVPPHVLQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQPPALHSQYQSSG MMQPGMHYMQQQQMTQQSLMAARSSMMYSQQPYAALQQQAAMNSQAAMNSQLGMSGGGGGGSTSGLHMLQSDSSGGGGGSSGGHLGFPDFSSRDGREMGS SKQEMGSGGGSSDARGGSSGGGGDGGETLYLKSNDDGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10006568 [exp]	0	1
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10005524 [exp]	6.4	0.9456
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021157 [exp]	8.2	0.9380
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10000104 [exp]	8.5	0.8762
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	9.2	0.8717
AT1G79060			unknown protein		Lus10031218 [exp]	10.5	0.9203
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10040853 [exp]	10.8	0.9311
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10039179 [exp]	12.3	0.8942
AT5G10400			Histone superfamily protein (....		Lus10031822 [exp]	13.6	0.9273
AT3G10610			Ribosomal S17 family protein (...		Lus10016985 [exp]	13.7	0.9037
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10027980 [exp]	14.7	0.9198

Compare expression of checked genes

Lus10006568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.