Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005523 [exp] 239 / 1e-81 ND 46 / 2e-06 Lus10022005 [exp] 73 / 7e-17 AT3G56710 48 / 1e-07 sigma factor binding protein 1 (.1) Lus10039494 [exp] 44 / 8e-06 AT3G56710 56 / 3e-10 sigma factor binding protein 1 (.1) Lus10024139 [exp] 44 / 9e-06 AT3G56710 58 / 5e-11 sigma factor binding protein 1 (.1) Lus10039493 [exp] 43 / 3e-05 AT3G56710 54 / 1e-09 sigma factor binding protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G043800 [exp] 62 / 7e-13 AT2G41180 / sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.016G093900 [exp] 62 / 8e-13 AT2G41180 / sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.019G013750 [exp] 57 / 9e-11 AT3G56710 46 / 7e-07 sigma factor binding protein 1 (.1) Potri.019G013300 [exp] 56 / 1e-10 AT2G41180 47 / 3e-07 sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.001G029700 [exp] 46 / 9e-07 AT3G56710 54 / 5e-10 sigma factor binding protein 1 (.1) Potri.003G194700 [exp] 45 / 4e-06 AT3G56710 54 / 6e-10 sigma factor binding protein 1 (.1) Potri.006G038900 [exp] 44 / 8e-06 AT2G41180 56 / 2e-10 sigma factor binding protein 2, VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10006569 pacid=23149178 polypeptide=Lus10006569 locus=Lus10006569.g ID=Lus10006569.BGIv1.0 annot-version=v1.0 ATGGGTAAGTTGAGAAACTCCGATTGTGATGATGAAGTCCTTAACTTTCCGACTATCAAGAAGAAACAGAAACATTGGATGAAGAAGAAGGAGCCGATGA AGATTACGTACATCTCCAGTCCGACTCTGGTCAAGGCCGCCAGTGCTTCCGAGTTCCGCGCTCTGGTTCAGGAGCTCACCGGGAAAGATTCACGAGTCGG AGAAGAGGAGAATTATGATTACTATTCGCCGGTGACTTCCGGCGGAAGCGGCGGCAGTGGAAGCTCGGTGGAAGAGAACTATGATCAGGTGGCGTGTACG AGTGGGGTTGATGAGCTGGATTATAGTGACTACTTTGTTGTGGCGCCGGAGGATGGCTATTTGTCGAACAGTACTGGTGATGTTGTTACGGCGGCGGCGG TGGAGGAAACGGCGTCGTATTCGACGATGGAGATGGAGGAAGGGGGATTTTCATTGTGGAGAGATGTTCCTGATGGGTTCGGGAATGTGGGAGGGCTTAA TCAATACTCTCTTAATTGTGTCTTTGTATAA
AA sequence Show only first row Show all	>Lus10006569 pacid=23149178 polypeptide=Lus10006569 locus=Lus10006569.g ID=Lus10006569.BGIv1.0 annot-version=v1.0 MGKLRNSDCDDEVLNFPTIKKKQKHWMKKKEPMKITYISSPTLVKAASASEFRALVQELTGKDSRVGEEENYDYYSPVTSGGSGGSGSSVEENYDQVACT SGVDELDYSDYFVVAPEDGYLSNSTGDVVTAAAVEETASYSTMEMEEGGFSLWRDVPDGFGNVGGLNQYSLNCVFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006569 [exp]	0	1
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	1.4	0.8379
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	3.5	0.8086
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	5.2	0.8020
					Lus10018325 [exp]	5.3	0.8017
					Lus10005523 [exp]	10.2	0.7883
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10013201 [exp]	13.4	0.7493
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10037226 [exp]	14.5	0.7820
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039506 [exp]	15.2	0.7641
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10029170 [exp]	19.6	0.7549
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	19.8	0.7798

Compare expression of checked genes

Lus10006569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.