Plant FIBer expression Database

Lus10006570 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08750 575 / 0 Peptidase C13 family (.1.2.3)
AT2G25940 102 / 8e-24 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1)
AT4G32940 99 / 1e-22 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1)
AT1G62710 96 / 2e-21 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1)
AT3G20210 96 / 2e-21 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005520
[exp]
757 / 0 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3)
Lus10006571
[exp]
646 / 0 AT1G08750 460 / 1e-163 Peptidase C13 family (.1.2.3)
Lus10007450
[exp]
109 / 9e-26 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1)
Lus10024446
[exp]
108 / 1e-25 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1)
Lus10024599
[exp]
93 / 2e-20 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1)
Lus10032236
[exp]
92 / 7e-20 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1)
Lus10033344
[exp]
90 / 3e-19 AT2G25940 473 / 3e-164 alpha-vacuolar processing enzyme (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G014000
[exp]
622 / 0 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3)
Potri.006G232900
[exp]
102 / 2e-23 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1)
Potri.018G059400
[exp]
97 / 9e-22 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1)
Potri.008G003400
[exp]
97 / 2e-21 AT2G25940 534 / 0.0 alpha-vacuolar processing enzyme (.1)
Potri.003G113300
[exp]
89 / 5e-19 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1)
Potri.001G119800
[exp]
87 / 1e-18 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0093 Peptidase_CD PF01650 Peptidase_C13 Peptidase C13 family
Representative CDS sequence
>Lus10006570 pacid=23149182 polypeptide=Lus10006570 locus=Lus10006570.g ID=Lus10006570.BGIv1.0 annot-version=v1.0
ATGGCTGCTTCGTCCTCATCGCCGTCGGCGGCGGCGGCGGCAGTGATTCTTGCCTCGATTTGGGTCTGCATTTCGTTCACCGCCGGCGCATCAAGTGAAA
CTACAATGCACACTAATAACTGGGCTGTCTTGGTCTGCACATCTCGCTTCTGGTTTAATTACAGGCACATGGCTAATACTCTGTCCTTGTATAGGACAGT
TAAGCGGCTAGGTATACCAGATGAAAGGATCATACTGATGTTGGCAGATGATATGGCTTGTAATGCTAGGAACAAGTACCCTGCCCAAGTTTTCAACAAT
GAGAACCACTGGCTCAATTTGTATGGCGATAATGTTGAGGTGGATTATCGAGGTTACGAAGTGACTGTGGAGAATTTTTTTCGGGTTCTCACAGGGCGGC
ATGAGCCTGCTGTTCCTAGGTCAAAGCGGCTCCTTAGTGATGAAGGGAGTCACATTCTTCTTTATATGACTGGGCATGGGGGTGATGAGTTCTTAAAATT
CCAGGACTCGGAGGAGCTACAAAGTCATGATTTAGCTGATGCAGTGAAGCAAATGAAGGAAAAGCATAGATTTAAGGAGTTGCTGATAATGGTGGACACT
TGCCAAGCTGCCACTCTTTTCAATCAGCTCCATTCACCTGGTGTTCTAGCCATTGCAAGTAGCAAGAAAGGGGAGAATTCGTACTCGCATCATTTGGACT
CTGATGTTGGTGTCTCTGTCGTTGATCGGTTTACATTCTACACCCTTGCATTCTTTGAAAGATTGAATATTTATGACAATGCTTCATTGAGCAGGCTTTT
CACCTCGTATGATCCGAACTTGTTAATGTCCAACGCGTACTACAGAACCGATCTTTACCAGCGGAACTTGCAGGAGGTTCCTGTGACAAACTTTTTCGGG
TCTGTAATGGAAACAATACACACAGATTCTGCTTATAAGGGCTTTCCAGGAACCAAAAATCGTGGTGGTGAGACAGCTGAAGAGGATAATAGAAACGTAC
TGGTGGATGCAGATGTCCATGATGGAAGTAACAATAGAAAGCCGGAATGCCCCTTCACTAGAATGGTGAGTGCACTTGAATCCAGAGTACAAAAGGTTGC
CGATTCCGATTCCATTGTGAATTACGGATTAGGGATGATGCTGCCGTTCCTGGCTGTATCAGTGTGGTTGTCAGCTTGA
AA sequence
>Lus10006570 pacid=23149182 polypeptide=Lus10006570 locus=Lus10006570.g ID=Lus10006570.BGIv1.0 annot-version=v1.0
MAASSSSPSAAAAAVILASIWVCISFTAGASSETTMHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNKYPAQVFNN
ENHWLNLYGDNVEVDYRGYEVTVENFFRVLTGRHEPAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDT
CQAATLFNQLHSPGVLAIASSKKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNIYDNASLSRLFTSYDPNLLMSNAYYRTDLYQRNLQEVPVTNFFG
SVMETIHTDSAYKGFPGTKNRGGETAEEDNRNVLVDADVHDGSNNRKPECPFTRMVSALESRVQKVADSDSIVNYGLGMMLPFLAVSVWLSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G08750 Peptidase C13 family (.1.2.3) Lus10006570
[exp]
0 1
AT5G49170 unknown protein Lus10006495
[exp]
1.4 0.9016
AT4G30440 GAE1 UDP-D-glucuronate 4-epimerase ... Lus10023212
[exp]
2.0 0.8929
AT4G17615 ATCBL1, SCABP5,... SOS3-LIKE CALCIUM BINDING PROT... Lus10000995
[exp]
2.0 0.8788
AT1G29470 S-adenosyl-L-methionine-depend... Lus10018954
[exp]
4.9 0.8820
AT1G29340 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-B... Lus10029266
[exp]
9.6 0.8233
AT3G60600 (AT)VAP, (AT)VA... VAMP/SYNAPTOBREVIN-ASSOCIATED ... Lus10000031
[exp]
13.7 0.7570
AT4G34490 ATCAP1 cyclase associated protein 1 (... Lus10042324
[exp]
15.0 0.8395
AT1G08750 Peptidase C13 family (.1.2.3) Lus10006571
[exp]
16.9 0.8367
AT3G06035 Glycoprotein membrane precurso... Lus10034054
[exp]
16.9 0.8691
AT5G03690 Aldolase superfamily protein (... Lus10035571
[exp]
19.6 0.8640

Lus10006570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.