Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08750 460 / 2e-163 Peptidase C13 family (.1.2.3) AT1G62710 57 / 8e-09 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006570 [exp] 648 / 0 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3) Lus10005520 [exp] 616 / 0 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3) Lus10007450 [exp] 66 / 8e-12 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024446 [exp] 66 / 8e-12 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024599 [exp] 52 / 2e-07 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1) Lus10032236 [exp] 52 / 3e-07 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014000 [exp] 509 / 0 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3) Potri.006G232900 [exp] 64 / 2e-11 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1) Potri.018G059400 [exp] 60 / 7e-10 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1) Potri.003G113300 [exp] 51 / 7e-07 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1) Potri.001G119800 [exp] 49 / 2e-06 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF01650 [flax] [poplar] Peptidase_C13 Peptidase C13 family
Representative CDS sequence Show only first row Show all	>Lus10006571 pacid=23149215 polypeptide=Lus10006571 locus=Lus10006571.g ID=Lus10006571.BGIv1.0 annot-version=v1.0 ATGGCTTGTAATGCTAGGAACAAGTACCCTGCCCAAGTTTTCAACAATGAGAACCACTGGCTCAATTTGTATGGCGATAATGTTGAGGTGGATTATCGAG GTTACGAAGTGACTGTGGAGAATTTTTTTCGGGTTCTCACAGGGCGGCATGAGCCTGCTGTTCCTAGGTCAAAGCGGCTCCTTAGTGATGAAGGGAGTCA CATTCTTCTTTATATGACTGGGCATGGGGGTGATGAATTCTTAAAATTCCAGGACTCGGAGGAGCTACAAAGTCATGATTTAGCTGATGCAGTGAAGCAA ATGAAGGAAAAGCATAGATTTAAGGAGTTGCTGATAATGGTGGACACTTGCCAAGCTGCCACTCTTTTCAATCAGCTCCATTCACCTGGTGTTCTAGCCA TTGCAAGTAGCAAGAAAGGGGAGAATTCGTACTCGCATCATTTGGACTCTGATGTTGGTGTCTCTGTCGTTGATCGGTTTACATTCTACACCCTTGCATT CTTTGAAAGATTGAATATTTATGACAATGCTTCATTGAGCAGGCTTTTCACCTCGTATGATCCGAACTTGTTAATGTCCAACGCGTACTACAGAACCGAT CTTTACCAGCGGAACTTGCAGGAGGTTCCTGTGACAAACTTTTTCGGGTCTGTAATGGAAACAATACACACAGATTCTGCTTATAAGGGCTTTCCAGGAA CCAAAAATCGTGGTGGTGAGACAGCTGAAGAGGATAATAGAAACGTACTGGTGGATGCAGATGTCCATGATGGAAGTAACAATAGAAAGCCGGAATGCCC CTTCACTAGAATGGTGAGTGCACTTGAATCCAGAGTACAAAAGGTTGCCGATTCCGATTCCATTGTGAATTACGGATTAGGGATGATGCTGCCGTTCCTG GCTGTATCAGTGTGGTTGTCAGCTTGA
AA sequence Show only first row Show all	>Lus10006571 pacid=23149215 polypeptide=Lus10006571 locus=Lus10006571.g ID=Lus10006571.BGIv1.0 annot-version=v1.0 MACNARNKYPAQVFNNENHWLNLYGDNVEVDYRGYEVTVENFFRVLTGRHEPAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQ MKEKHRFKELLIMVDTCQAATLFNQLHSPGVLAIASSKKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNIYDNASLSRLFTSYDPNLLMSNAYYRTD LYQRNLQEVPVTNFFGSVMETIHTDSAYKGFPGTKNRGGETAEEDNRNVLVDADVHDGSNNRKPECPFTRMVSALESRVQKVADSDSIVNYGLGMMLPFL AVSVWLSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	0	1
AT5G11710			ENTH/VHS family protein (.1)		Lus10005498 [exp]	1.0	0.9268
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10033733 [exp]	1.4	0.9148
AT5G27490			Integral membrane Yip1 family ...		Lus10031511 [exp]	2.8	0.8685
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	3.0	0.9013
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	4.0	0.8441
AT1G76240			Arabidopsis protein of unknown...		Lus10012275 [exp]	8.8	0.8528
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	9.2	0.8667
AT4G17650			Polyketide cyclase / dehydrase...		Lus10042651 [exp]	9.9	0.8146
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10028404 [exp]	10.9	0.8594
					Lus10019700 [exp]	11.7	0.8269

Compare expression of checked genes

Lus10006571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.