Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04590 49 / 2e-07 AT-hook AT hook motif DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005518 [exp] 95 / 1e-23 AT3G04590 238 / 9e-75 AT hook motif DNA-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014200 [exp] 44 / 2e-05 AT3G04590 181 / 2e-53 AT hook motif DNA-binding family protein (.1.2) Potri.013G044000 [exp] 42 / 4e-05 AT3G04590 171 / 2e-49 AT hook motif DNA-binding family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006572 pacid=23149193 polypeptide=Lus10006572 locus=Lus10006572.g ID=Lus10006572.BGIv1.0 annot-version=v1.0 ATGGAGCAAGAGGATACATCTCACCACCATCACCACCACCACTCTCTCACTTCCTATTACTCTTCAACCACCGCTGCTCCTCCTCCTTCCTCCGCCGCCG GCGGAGGAGGACCTGCTAACAGCTCACCGAACAATGGTGTGGGAGGAGGAGGCTCCGAATCTGTTGGTGCTGGTTACCATATGGTGTACCCTCACTCGGT TGGGCCGTCGGCGGCTCCGGCGGATCCTGTGAGGAGGAAGAGGGGCAGGCCGAGGAAGTACGGGACTCCTGAACAGGCTTTGGCGGCAAAGAGGACTGCT GCTGCGGCTTCTTCTGCTTCTAGGGAGAAGACCTCTCTGTCGTTTCCTGCCTTCAATAAGAAGTCTCAGCCCTACTTGGCTACGCCTGGTTTGTCCTTCT CTCATCTATCTAAATCCTGTTTGGTTTCGGTCTGTTTCTTCGTCTGA
AA sequence Show only first row Show all	>Lus10006572 pacid=23149193 polypeptide=Lus10006572 locus=Lus10006572.g ID=Lus10006572.BGIv1.0 annot-version=v1.0 MEQEDTSHHHHHHHSLTSYYSSTTAAPPPSSAAGGGGPANSSPNNGVGGGGSESVGAGYHMVYPHSVGPSAAPADPVRRKRGRPRKYGTPEQALAAKRTA AAASSASREKTSLSFPAFNKKSQPYLATPGLSFSHLSKSCLVSVCFFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006572 [exp]	0	1
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006573 [exp]	1.4	0.8573
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10042762 [exp]	2.8	0.8063
AT2G27500			Glycosyl hydrolase superfamily...		Lus10020618 [exp]	3.7	0.7795
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	4.5	0.8484
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002808 [exp]	7.7	0.8197
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002809 [exp]	10.0	0.7889
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019985 [exp]	10.0	0.7734
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10027276 [exp]	10.7	0.8117
AT1G71980			Protease-associated (PA) RING/...		Lus10000053 [exp]	10.7	0.8253
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011859 [exp]	11.7	0.7394

Compare expression of checked genes

Lus10006572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.