Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04590 171 / 2e-51 AT-hook AT hook motif DNA-binding family protein (.1.2) AT4G12080 110 / 5e-29 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G25320 107 / 2e-27 AT-hook AT hook motif DNA-binding family protein (.1) AT5G28590 103 / 2e-27 AT-hook DNA-binding family protein (.1) AT5G51590 103 / 5e-26 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 103 / 7e-26 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 100 / 2e-25 AT-hook AT hook motif DNA-binding family protein (.1.2) AT2G33620 98 / 3e-24 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G00200 91 / 6e-22 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63470 88 / 2e-20 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005518 [exp] 357 / 2e-124 AT3G04590 238 / 9e-75 AT hook motif DNA-binding family protein (.1.2) Lus10015027 [exp] 114 / 2e-30 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 111 / 2e-29 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10031696 [exp] 110 / 1e-28 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10011067 [exp] 104 / 2e-26 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10000315 [exp] 104 / 2e-26 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10030269 [exp] 103 / 3e-26 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004022 [exp] 103 / 3e-26 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10031118 [exp] 101 / 3e-26 AT4G25320 231 / 2e-74 AT hook motif DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044000 [exp] 195 / 2e-61 AT3G04590 171 / 2e-49 AT hook motif DNA-binding family protein (.1.2) Potri.019G014200 [exp] 189 / 4e-59 AT3G04590 181 / 2e-53 AT hook motif DNA-binding family protein (.1.2) Potri.012G129500 [exp] 114 / 2e-30 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 110 / 9e-29 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.014G070000 [exp] 108 / 2e-28 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 108 / 2e-28 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G143500 [exp] 108 / 4e-28 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.003G090900 [exp] 107 / 2e-27 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.003G126500 [exp] 94 / 6e-23 AT1G63470 296 / 2e-98 AT hook motif DNA-binding family protein (.1) Potri.005G256500 [exp] 95 / 7e-23 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10006573 pacid=23149205 polypeptide=Lus10006573 locus=Lus10006573.g ID=Lus10006573.BGIv1.0 annot-version=v1.0 ATGTTCATGCAACAAAGTAAGAGCGAGACATGTGTTTTGTCTGCATCCGGAGTCATCTCAAGTGCGACAATTCGTCAGCCCACAATATCAGGGGGTAACT TAACTTACGAGGGTCGGTTTGATATCATTTCGCTCACTGGATCTTATATAAGGACTGAACTTGGAGGTAGAACTGGCGGGCTCAGTATCTGCATGTCTAA TAATGATAACCAAATAATCGGGGGAGGACTTAGTGGACCCCTAATTGCTGCTGGCGCTGTTCAGGTTATTGTTGGAACGTTCACACTCGATAACAAGAAG GATGCCAGTAACGGTGTCAGACTAGAGGCTTCTTCTCCCGGTAAGTTGCCGTCCCCAGTTGGAGGATCCTCTATGTCTAGTATTAGCTTCCGTTCTCCCG TGGAATCTTCGGGGAGGAATCCGGCTCATGCAAACGATGATCATCAAACGATGGCCGGAAGTCCTTTCATGATGCACAATCGGAGTATGCAAATGGCTTC CAGACCTTTGGAATGGAGGACTGGTCCGGATCCTAGGACCGGCTCTGGCTATGACTTGACAGGAAGAACAGGTCCTGGAGGAGCACACCGGTCCCCCGAA AACGGCAACTACGATCAACTTCCAGATTAG
AA sequence Show only first row Show all	>Lus10006573 pacid=23149205 polypeptide=Lus10006573 locus=Lus10006573.g ID=Lus10006573.BGIv1.0 annot-version=v1.0 MFMQQSKSETCVLSASGVISSATIRQPTISGGNLTYEGRFDIISLTGSYIRTELGGRTGGLSICMSNNDNQIIGGGLSGPLIAAGAVQVIVGTFTLDNKK DASNGVRLEASSPGKLPSPVGGSSMSSISFRSPVESSGRNPAHANDDHQTMAGSPFMMHNRSMQMASRPLEWRTGPDPRTGSGYDLTGRTGPGGAHRSPE NGNYDQLPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006573 [exp]	0	1
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006572 [exp]	1.4	0.8573
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	1.4	0.8594
					Lus10003592 [exp]	2.2	0.8232
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10027938 [exp]	2.4	0.8042
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	7.5	0.8294
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	8.4	0.7718
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10041487 [exp]	8.5	0.7560
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	8.9	0.7847
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	10.8	0.8256
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	12.6	0.7587

Compare expression of checked genes

Lus10006573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.