Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04580 932 / 0 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 769 / 0 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT1G04310 522 / 3e-176 ERS2 ethylene response sensor 2 (.1) AT1G66340 462 / 8e-152 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 332 / 2e-103 ERS1 ethylene response sensor 1 (.1) AT5G35750 99 / 7e-21 AHK2 histidine kinase 2 (.1) AT1G27320 87 / 4e-17 AHK3 histidine kinase 3 (.1) AT2G01830 86 / 8e-17 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT2G17820 65 / 3e-10 AHK1, ATHK1 histidine kinase 1 (.1) AT1G59940 56 / 2e-08 ARR3 response regulator 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005517 [exp] 1479 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10042549 [exp] 1223 / 0 AT3G04580 944 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10022009 [exp] 1223 / 0 AT3G04580 937 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10022203 [exp] 873 / 0 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10041159 [exp] 869 / 0 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021212 [exp] 869 / 0 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021880 [exp] 868 / 0 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10031382 [exp] 442 / 6e-144 AT1G66340 1206 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10007357 [exp] 437 / 7e-142 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044100 [exp] 1102 / 0 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.019G014300 [exp] 1081 / 0 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.010G074300 [exp] 922 / 0 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G164400 [exp] 909 / 0 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 455 / 5e-149 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.001G204200 [exp] 453 / 4e-148 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 369 / 5e-117 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.003G171000 [exp] 86 / 9e-17 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.010G102900 [exp] 82 / 7e-16 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 78 / 2e-14 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10006574 pacid=23149202 polypeptide=Lus10006574 locus=Lus10006574.g ID=Lus10006574.BGIv1.0 annot-version=v1.0 ATGTGTGCCATGTCTAGAGCATTAGTTCTTGGATTGATATCCATCGCATTCATTTTGACCTCAGTATCAGCTGAGGATAGTGAGTTTGTGAACTGTAACT GTGACGACGAAAGCACCGGATTCTGGACTGTACACAACATTCTTGAGTGCCAGAGAGTGAGTGATTTCTTGATCTGTGCAGCTTATTTCTCAATCCCCAT TGAACTACTCTACTTCGTCAGCTGCTCCAACTTCCCTTTCAAATGGGTGTTCCTCGAGTTCATAGCGTTCATAGTCCTTTGTGGGTTGACTCACTTGCTC AACGGGTGGACTTATTACGGTCCACACTCATTCCAGCTGATGCTTTCCTTGACAGTTGCAAAATTCCTCACTGCTTTGGTTTCATGCGCCACTTCTATAA CCCTCCTCACTTTGTTCCCTCTCCTTCTGAAAGTGAAAGTGAGGGAGCTTTTCTTGAAGCAGAATGTTCTCGAGTTGGATCAAGAGGTTGGGCTGATGAA GAAAAAGAAGCTAGCTAGCCTCCATGTCCGAATGCTAACAAGAGAGATTAGGAAGTCTCTTGACAAGCACAATATATTGTACACCACTCTCGTCGAACTC TCGAAAACACTTGGTTTGTACAACTGTGCTGTATGGATGCCTAATGAGAAGAGAACTGAGATGAATCTCACTCACGAGTTACGATCAAGTTCGAAAAACC ATCATTTTTCTATCCCGGTCAATGACCGGGATGTGCTGGAGATTAAGTCCACCAAGGGGGTGAATATTCTGAGGTCAGATTCAGCACTTGGGAATGTGAG TTCTGGTGGTGATGGTGCTGAGGAATCTGGTGCTGTGGCTGCAATAAGGATGCCAATGCTTCGAGTTTCGGATTTCAAAGGTGGTACCCCGGAGTTCATA GATACTAGTTATGCTATCCTGGTTCTGGTTCTTCCAAGTGGAAGCTCGTGGTCTTACGAAGCGATGGAGATACTTGAAGTGGTTGCTGATCAGGTAGCGG TGGCATTGTCCCATGCTGCGGTTCTCGAGGAATCTCAGCTGATGAGGGAGCAGCTGAGCGAGCAGAATCGGGCGTTGCAGCAGGCTAAGATGAATGCAAT GATGGCTAGTCAGGCAAGGAACTCGTTTCAAAAGGTGATGAGTCACGGGATGAGGAGACCGATGCATTCGATCATTGGATTGCTCTCGATGTTCCAGGAT GACAGCATGAGCTTCGACCAGAAAATCGTTGGTGACACGTTGATGAAAGCTAGTAATGTGCTTTCCACTTTGATTAATGATGCAATGGAGATTTCAGTTA AAGATACAGGGAGGTTCCCCCTAGAGATGAGGCCTTTTCGGCTACATTCCATGATCAAGGAAGCTTCTTGCCTAGCCAAGTGTTTGTGTGTGTATAAAGG CTTTGGCTTTGACATTGATGTTCAAAGCTCTTTGCCTGATTTAGTAGTAGGAGATGAACGAAGGGCTTTCCAAGTGATTTTGCATATGTTTGGTTACTTG TTGGATCTGTATGATAATGGTAGGGGAACCATCATATTTCGGGTATTCTTGGAGAATGGCAGTAGTAGTGGAGGAAAGAATATGTGGAAAGCAAATGTCT CTGATGGATATGTATCTATAAAGTTTGAGATCGAAATTAAAGACGAAAGTTCATCAAATGGCCCGATGTCAGCTGCTCAGAGGAGGCTAGCCAGTCCTGA AATTAAAGAAGGGCTTAGATTCAACATGTGCAAGAAGCTCGTTCAGATGATGCAAGGTAACATTTGGGTATCACCAAATGCATTCGGTTTTGTGAAAAGC ATGAATCTTGTTCTCCGGTTTGAAACCAGACAATCGATCGGCAGAGCAGCTGCATTTGCACCCTCAGAACAACCAAACGCCACGCCTCCTCCTCAGTTCA AAGGCCTGAAGATAGTGCTGGCAGACGACGACAATGTAAATCGAACTGTGACAAAGAAGCTGCTGGAGAAACTAGGATGTGATGTCACTGCAGTCGCTTC GGGGTTCGAGTGCCTCAGCACACTTAGCTCAGAGAACACTGTCAGAGTGCTGATACTGGACCTCCAGATGCCAGAGATGGATGGCTACGAAGTTGCAACG AGAATCAGAAAGTTCCGGAGCAGGAACTGGCCGTTGATCATAGCCCTGACTGCTAGTGCAGAAGACAATGTGTGGGAGAGATGCCTGCAGTTGGGAATGA ATGGAGTGATCAGGAAACCAGTTCTGTTGCAAGTTATGGCTGATGAACTTCGTAGGGTTCTTCAGGCTCTCAACGTCAAGGAGAAGGCGATTAGGGAGTT GACGACCGAGATGGTGAGCTCGGAGGAATCACATGTGAAATTGCTGGATGATTTGGGGAAAGCGAAGCTCACCGAGGTTGAGAGCCTGAATCGGCTGTCG AAGATGAATCCGAGAGTTTTTTACTTGGAAGCGAAGGTTGAGAGCCTAAATCTACTGGAGAAAAAGCTGATTGAAGCTTATCGAAGAAAAAGAAAAGGAG GAAGTTAG
AA sequence Show only first row Show all	>Lus10006574 pacid=23149202 polypeptide=Lus10006574 locus=Lus10006574.g ID=Lus10006574.BGIv1.0 annot-version=v1.0 MCAMSRALVLGLISIAFILTSVSAEDSEFVNCNCDDESTGFWTVHNILECQRVSDFLICAAYFSIPIELLYFVSCSNFPFKWVFLEFIAFIVLCGLTHLL NGWTYYGPHSFQLMLSLTVAKFLTALVSCATSITLLTLFPLLLKVKVRELFLKQNVLELDQEVGLMKKKKLASLHVRMLTREIRKSLDKHNILYTTLVEL SKTLGLYNCAVWMPNEKRTEMNLTHELRSSSKNHHFSIPVNDRDVLEIKSTKGVNILRSDSALGNVSSGGDGAEESGAVAAIRMPMLRVSDFKGGTPEFI DTSYAILVLVLPSGSSWSYEAMEILEVVADQVAVALSHAAVLEESQLMREQLSEQNRALQQAKMNAMMASQARNSFQKVMSHGMRRPMHSIIGLLSMFQD DSMSFDQKIVGDTLMKASNVLSTLINDAMEISVKDTGRFPLEMRPFRLHSMIKEASCLAKCLCVYKGFGFDIDVQSSLPDLVVGDERRAFQVILHMFGYL LDLYDNGRGTIIFRVFLENGSSSGGKNMWKANVSDGYVSIKFEIEIKDESSSNGPMSAAQRRLASPEIKEGLRFNMCKKLVQMMQGNIWVSPNAFGFVKS MNLVLRFETRQSIGRAAAFAPSEQPNATPPPQFKGLKIVLADDDNVNRTVTKKLLEKLGCDVTAVASGFECLSTLSSENTVRVLILDLQMPEMDGYEVAT RIRKFRSRNWPLIIALTASAEDNVWERCLQLGMNGVIRKPVLLQVMADELRRVLQALNVKEKAIRELTTEMVSSEESHVKLLDDLGKAKLTEVESLNRLS KMNPRVFYLEAKVESLNLLEKKLIEAYRRKRKGGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10006574 [exp]	0	1
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	2.4	0.9043
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030945 [exp]	3.2	0.8619
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10012999 [exp]	3.5	0.8818
AT5G24080			Protein kinase superfamily pro...		Lus10039315 [exp]	3.7	0.8888
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037241 [exp]	12.8	0.8735
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10016827 [exp]	13.2	0.8097
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	17.1	0.8141
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	21.4	0.8749
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10029595 [exp]	24.3	0.8646
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10029416 [exp]	25.7	0.8220

Compare expression of checked genes

Lus10006574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.