Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54650 375 / 2e-131 Methyltransferase family protein (.1.2) AT2G26200 152 / 9e-42 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005515 [exp] 328 / 2e-112 AT1G54650 212 / 4e-67 Methyltransferase family protein (.1.2) Lus10024993 [exp] 139 / 5e-37 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044300 [exp] 407 / 1e-143 AT1G54650 376 / 2e-131 Methyltransferase family protein (.1.2) Potri.006G225600 [exp] 135 / 1e-35 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08242 [flax] [poplar] Methyltransf_12 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10006576 pacid=23149206 polypeptide=Lus10006576 locus=Lus10006576.g ID=Lus10006576.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCAGCAGCAGCGAAGCCTGACGAAGCAGAGTACTTCTCCAACGACTTTGACTGGGAATCACTCAAACAACAAGTTGAAACCAACCCTTCTT TTCAATTTCACTTGCATCCTCATCTCCCTTCCTCATCCCACAAAGAAGAAGCAGAAGCGAGAGATTCCAATGCCTGGCAGAGCTTCCACATCCGCCATTC CTCCGGCAAGTTCTTCAAGGAGAGAAGGTATTTGCTGAAGGAGTTCCCTGAGCTGGTGGTCACTTCTTCAGAATCTACAAAAGTTTTGGAGGTTGGCTGT GGAAATGGAAGCTCCGTTATCCCTATTTTGCGTGGCAACAAGAACATCACTGTGTATGCTTGCGATTGTAGCAATGAGACTCTTGATAGGGTTAAAGAGA TGATTTTGGATGCTAATCTGGCTTATTCCGTTGATCGTTTCGTTCCGTTCTTTTGTGATTTTGCTTCAACTGGATTCCCTGAATGGCTGGCTTGCAATTC CTGCAAGGGCATTGTCCATCACACTCAACAGAATTGTTCTTCAGAAGGCCGCTGCTGCATTGGCGGAGTCGATTTCGTTACCTTGATATTCACACTATCA GCTGTGCCGCTCAAATTGATGCCCAAAGCCATTAAGGAATGCTTTTCTGTTCTGAAGCCTGGTGGTCTGCTCTTGTTTAGAGACTATGGGCTATATGACA TGACCATGCTGCGGTTCAAGCCAGATAAGAGGGTGGGGTTCAGAGAATACATACGAGGAGACGGGACTCGTTCTTATTTCTTCTGTTTAGATATTGTCCG AGAGCTTTTCCTCAATGCAGGCTTCGTTGAGGTGGAGCTCAATTACTGCTGCGTGAAGTCCGAGAATCGAAAAAGGGGGAAGACCATGCATAGGGTGTGG GTTCATGGAAAGTTTCAGAAGCCAATGTTGTAA
AA sequence Show only first row Show all	>Lus10006576 pacid=23149206 polypeptide=Lus10006576 locus=Lus10006576.g ID=Lus10006576.BGIv1.0 annot-version=v1.0 MAEAAAAKPDEAEYFSNDFDWESLKQQVETNPSFQFHLHPHLPSSSHKEEAEARDSNAWQSFHIRHSSGKFFKERRYLLKEFPELVVTSSESTKVLEVGC GNGSSVIPILRGNKNITVYACDCSNETLDRVKEMILDANLAYSVDRFVPFFCDFASTGFPEWLACNSCKGIVHHTQQNCSSEGRCCIGGVDFVTLIFTLS AVPLKLMPKAIKECFSVLKPGGLLLFRDYGLYDMTMLRFKPDKRVGFREYIRGDGTRSYFFCLDIVRELFLNAGFVEVELNYCCVKSENRKRGKTMHRVW VHGKFQKPML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	0	1
AT2G14210	MADS	AGL44, ANR1	ARABIDOPSIS NITRATE REGULATED ...		Lus10028214 [exp]	2.0	0.9467
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	3.0	0.9497
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	3.9	0.9436
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	4.5	0.9451
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	4.6	0.9463
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10002663 [exp]	6.5	0.9396
AT3G10120			unknown protein		Lus10027167 [exp]	7.5	0.9393
AT1G66540			Cytochrome P450 superfamily pr...		Lus10032856 [exp]	7.5	0.9284
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10016249 [exp]	7.7	0.9397
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	8.5	0.9358

Compare expression of checked genes

Lus10006576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.