Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04570 169 / 2e-50 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT4G14465 164 / 5e-49 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT3G55560 140 / 1e-39 AT-hook AHL15, AGF2 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) AT4G22810 140 / 4e-39 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G45430 139 / 5e-39 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G12050 139 / 7e-39 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G17800 134 / 2e-37 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G35270 132 / 2e-36 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT1G76500 130 / 7e-36 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) AT3G60870 125 / 5e-34 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042551 [exp] 168 / 2e-50 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1) Lus10022010 [exp] 154 / 2e-45 AT4G14465 198 / 7e-63 AT-hook motif nuclear-localized protein 20 (.1) Lus10000519 [exp] 141 / 1e-39 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 141 / 2e-39 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10020763 [exp] 137 / 2e-38 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10009301 [exp] 129 / 4e-35 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10015862 [exp] 128 / 5e-35 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10031460 [exp] 122 / 5e-34 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10031458 [exp] 115 / 6e-31 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044500 [exp] 231 / 5e-75 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.010G074201 [exp] 172 / 5e-52 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.014G070800 [exp] 150 / 2e-43 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.002G149300 [exp] 148 / 1e-42 AT2G45430 226 / 1e-72 AT-hook motif nuclear-localized protein 22 (.1) Potri.010G200100 [exp] 146 / 2e-41 AT3G55560 209 / 2e-65 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.001G115200 [exp] 145 / 2e-41 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.003G116900 [exp] 145 / 2e-41 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.008G058700 [exp] 145 / 4e-41 AT3G55560 192 / 5e-59 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.005G257200 [exp] 142 / 2e-40 AT1G76500 192 / 2e-59 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) Potri.002G003800 [exp] 139 / 4e-39 AT1G76500 186 / 6e-57 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10006577 pacid=23149181 polypeptide=Lus10006577 locus=Lus10006577.g ID=Lus10006577.BGIv1.0 annot-version=v1.0 ATGTCGAACCCTTGGTGGGCAGGTCAAGCAGGGCTACCGGGGATGGACACGTCGACGAGCTCATCCTCTCCGATGAAGGTCAAGCAGCCAGATCTCGGAA TCTCCATGTCGAACGCCGGAGGAGCCGCCGACAGCGGCTCCGGCGGAGGTCATGACTACGAGAGGGAGAACAGCGACGAGCCAAAGGAAGGCGCGGTGGT GGTGGGTGCGACGAGGCGGCCGCGGGGGAGACCGGCGGGGTCGAAGAACAAGCCGAAGCCGCCGATATTTGTGACCAGAGACAGCCCCAACGCGCTGAAG AGCCACGTGATGGAAATCGCGAGCGGAGCTGACGTGGCGGACAGCCTTGCTTGTTACGCAAGGAAGCGGCAGCGCGGCGTGTGTGTTTTGAACGGGAACG GGATGGTGACTAACGTCACCCTGAAGCAGCCTTCCGCTCCGGGGTCAGTCATGTCCCTGCAGGGGAGGTTCGAGATCCTCTCCCTGTCGGGAGCGTTCCT CCCGGGACCCGCGCCACCCGGAGCGACCGGTCTAACCGTCTACCTGGCGGGCGGCCAGGGACAGGTGGTGGGAGGGAGCGTGGTGGGGCCGCTAGTTGCA AGCGGTCCCGTCATGGTTATTGCGGCTACTTTTTCGAATGCTACTTACGAGAGGCTGCCGTTGGAGGAGGAGGAGGAAGCTGGTGGTCAACAGATGGGCG TGGGTGGAGGCGGAGGGGATGGAGGGAGTAATAGTGGGGGCGGAGGAGGTGGAGGAGGGATGGGAGATCCGAGTGGTGGGGGGGGGGGGGGGGGGGGGGG GGGTGTGAGTCGGGAGATCCGAGTGGTGGTGGTGGTGGTGGGGGGATGCCGTTTTACAATTTGCCCCCAAATTTGGTGGGGAATGGAGGGCAATTGA
AA sequence Show only first row Show all	>Lus10006577 pacid=23149181 polypeptide=Lus10006577 locus=Lus10006577.g ID=Lus10006577.BGIv1.0 annot-version=v1.0 MSNPWWAGQAGLPGMDTSTSSSSPMKVKQPDLGISMSNAGGAADSGSGGGHDYERENSDEPKEGAVVVGATRRPRGRPAGSKNKPKPPIFVTRDSPNALK SHVMEIASGADVADSLACYARKRQRGVCVLNGNGMVTNVTLKQPSAPGSVMSLQGRFEILSLSGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGPLVA SGPVMVIAATFSNATYERLPLEEEEEAGGQQMGVGGGGGDGGSNSGGGGGGGGMGDPSGGGGGGGGGGVSREIRVVVVVVGGCRFTICPQIWWGMEGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	0	1
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	4.0	0.9500
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	4.7	0.9430
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	4.9	0.9373
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	6.0	0.9375
AT2G34070		TBL37	TRICHOME BIREFRINGENCE-LIKE 37...		Lus10015309 [exp]	7.7	0.9359
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	7.7	0.9369
AT1G78780			pathogenesis-related family pr...		Lus10039018 [exp]	9.4	0.9263
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10041863 [exp]	11.0	0.9190
AT5G35370			S-locus lectin protein kinase ...		Lus10025618 [exp]	11.5	0.9219
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	13.2	0.9270

Compare expression of checked genes

Lus10006577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.