Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10650 392 / 3e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G41670 246 / 1e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02790 84 / 9e-18 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT3G07050 66 / 2e-11 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT1G52980 54 / 1e-07 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT1G10300 43 / 0.0004 Nucleolar GTP-binding protein (.1) AT1G50920 42 / 0.0006 Nucleolar GTP-binding protein (.1) AT5G66470 41 / 0.001 RNA binding;GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014654 [exp] 663 / 0 AT4G10650 383 / 2e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031060 [exp] 232 / 3e-73 AT2G41670 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006927 [exp] 87 / 6e-19 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10014672 [exp] 87 / 1e-18 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10018881 [exp] 65 / 4e-11 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10028574 [exp] 64 / 5e-11 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018858 [exp] 48 / 1e-05 AT3G07050 622 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10021017 [exp] 44 / 0.0002 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10002558 [exp] 44 / 0.0002 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083100 [exp] 390 / 2e-135 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G048900 [exp] 230 / 1e-72 AT2G41670 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G209900 [exp] 91 / 4e-20 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.002G241100 [exp] 59 / 3e-09 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.001G402500 [exp] 56 / 3e-08 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.009G054000 [exp] 42 / 0.0005 AT1G50920 1048 / 0.0 Nucleolar GTP-binding protein (.1) Potri.001G258900 [exp] 42 / 0.0005 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10006578 pacid=23149191 polypeptide=Lus10006578 locus=Lus10006578.g ID=Lus10006578.BGIv1.0 annot-version=v1.0 ATGGCGAGTTCGATAGCGCGGGAAATCGGAAACGCTGTGCAGAAAGCGGCGAAGATTAGGGGGAAAGGATGGTACACGCCTCACATGGCTGCTGCTGCAT CCGCCATTACGAGAAGAATCGAGCTGGTTGATATTGTTCTGGAAGTTAGAGATGCTAGGATTCCTTGGGCATCTGAGTATCCTCTGTATAGACAGCAGTG GCCTTCCAAACATTGGATCATTGCTTTGAACAAGATGGACCTTGCTGATCGTTCACAAACCCAGGATTGGAGGAAGTATTTTGAGCAGCGTAATTGGTTT TCTTATGCTGTGAATTCCCATAACAAGGACAATGTGAAAGAGTTTCTTAACTTTCTGCAATCGCAAGTCCGAGCATTAAACAAGGATAATCATCGCCAGA CAAGGAATGTGATGATTGTAGGGATCCCAAATGTTGGGAAGTCTGCTCTTGCCAATTCATTGCATCAGATTGGGAGGATTAGTGCTCTTGAAAGAGGGAA GTTCCGGTATGCAACGGTGAGTCCACATCCAGGAGAGACTAAGGACATTATCAGCTTGAAGATTGCTAGCCATCCGAATATTTATGTACTGGACACCCCT GGTATATTGCCCCCCGAGATCCTCGATATTGAGATGTGCTCCACTCTAGCTCTAACAGGAGCTATTAAGGACTGCTTTGTTGGGGAGGAGAAACTTGCTC AGTACTTCCTCGCTATTCTAACCTTAGGCAGTGAATACAAAAAGTGGGCAACTACTGGAAAGGGTAGCATTTCGAGCAGTCCGAAACCTGAAGGGAAACG CGGAGATCATTCTTCTACTGATCACACACAGGATTTCATAGTGCATGAAGTCCGGCAAAGCCTTCACAGGGCAATCACAGGTTTCCATGGCGACTTGCAA AAGGTTGAGGACTTGACAGAGCTGATTGAAATGCAGTTCACTGCTTTGGAAGAAGCTTTCCGGGTCCCAGCAGGATTGGGTGATGAAGGTCGTAGTAATA TAGGTTTTAAATTGATGAATCTGTATCGTACGGGTAGGCTTGGACACTACACTTTAGACAAGCCTGCATTTCCAGCGTAG
AA sequence Show only first row Show all	>Lus10006578 pacid=23149191 polypeptide=Lus10006578 locus=Lus10006578.g ID=Lus10006578.BGIv1.0 annot-version=v1.0 MASSIAREIGNAVQKAAKIRGKGWYTPHMAAAASAITRRIELVDIVLEVRDARIPWASEYPLYRQQWPSKHWIIALNKMDLADRSQTQDWRKYFEQRNWF SYAVNSHNKDNVKEFLNFLQSQVRALNKDNHRQTRNVMIVGIPNVGKSALANSLHQIGRISALERGKFRYATVSPHPGETKDIISLKIASHPNIYVLDTP GILPPEILDIEMCSTLALTGAIKDCFVGEEKLAQYFLAILTLGSEYKKWATTGKGSISSSPKPEGKRGDHSSTDHTQDFIVHEVRQSLHRAITGFHGDLQ KVEDLTELIEMQFTALEEAFRVPAGLGDEGRSNIGFKLMNLYRTGRLGHYTLDKPAFPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	0	1
AT1G05730			Eukaryotic protein of unknown ...		Lus10025588 [exp]	1.7	0.7889
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10003098 [exp]	5.3	0.7198
AT1G05730			Eukaryotic protein of unknown ...		Lus10027051 [exp]	5.8	0.7591
AT1G61670			Lung seven transmembrane recep...		Lus10030521 [exp]	10.0	0.6840
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	12.0	0.6673
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	13.9	0.6997
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	15.6	0.7351
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	16.4	0.7147
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Lus10003791 [exp]	19.1	0.7035
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	20.4	0.6530

Compare expression of checked genes

Lus10006578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.