Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20410 314 / 1e-106 RNA-binding ASCH domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014656 [exp] 481 / 5e-169 AT2G20410 295 / 1e-95 RNA-binding ASCH domain protein (.1) Lus10028672 [exp] 468 / 2e-166 AT2G20410 309 / 1e-103 RNA-binding ASCH domain protein (.1) Lus10042558 [exp] 347 / 2e-120 AT2G20410 306 / 4e-104 RNA-binding ASCH domain protein (.1) Lus10022016 [exp] 335 / 1e-115 AT2G20410 285 / 4e-96 RNA-binding ASCH domain protein (.1) Lus10000855 [exp] 53 / 1e-08 AT2G20410 55 / 2e-09 RNA-binding ASCH domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G017900 [exp] 356 / 3e-123 AT2G20410 288 / 2e-96 RNA-binding ASCH domain protein (.1) Potri.013G045800 [exp] 338 / 1e-117 AT2G20410 281 / 3e-95 RNA-binding ASCH domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04266 [flax] [poplar] ASCH ASCH domain
Representative CDS sequence Show only first row Show all	>Lus10006580 pacid=23149177 polypeptide=Lus10006580 locus=Lus10006580.g ID=Lus10006580.BGIv1.0 annot-version=v1.0 ATGCGCGGCGGCGGAAGGAGCGGCGGCAGAGGTGTCGGGGGAAGGGGCGGCGCCGGCAACTACACCAACCCCTGCTTGACTATGCACCAGCCTTGGGCTT CTCTGCTCGTACACGGCATTAAACGGATCGAAGGCAGATCCTGGCCGGCTCCCATTCGCGGGCGTTTGTGGATTCATGCGGCAAGTAAAGTTCCAGAGGA AGAGACAATCAAGGCAATGGAGGATTTCTACAGGGAAATCTATGCCTTGAATGGCGTTACTGATATCAAGTTTCCTGAACATTATCCTGTTTCCAGACTC TTGGGCTGCATTGAGGTAGTTGGATGTCTGAAGCTTGATGAAGTAGCGAATTGGGAGGCAATACCGGAAGGGGTGAGAGTAGAAGGACAGACTGATTTTT GTTGGCTTTGTGAATCGCCACAGAAATTGCTTATACCATTTGAGATGAGAGGCAATCAAGGTGTTTATAACTTGGAAAAAAAGATATTTGAGTCTGCACT TAGAGGTCTGGTCCCAGTTAAAGGACCAATGCCAGTGAAGTTTCCCCTTCCGAATCCCCAAGATCGCTTCTCATTGTGCCCTGGCTCTGTTAGCTCTCAG ACCCGATTGAATCCATCTGAAGTGGAGAAGTCATCAAGCCTTATTGCGGCTATCGATTCTGCTCGTGCAGCAGCCACACAGTTCAGCAAAAAGGATCAGA ATCACAACTCTAGTCCCGTCGAAAATTCGAGCTCAACCAGACAATACGAATTGAGAAGCAAGTCGTCGTCTTCTGAACAGAGTGAGATTCCAGCGACGAA TTCTCCTGATGTTTGTGACGAGAAGGATGAGCCGAAAATGTTGAAGGAATCGAAACCAGACAACCAGGTTCAGCCTGAAGAGAGTAGCAGCCTTCGGATC AATTCCCAAGCAGGTTTGGATCAACGTCCTAGAGCTTCTTCAAAGGTATAG
AA sequence Show only first row Show all	>Lus10006580 pacid=23149177 polypeptide=Lus10006580 locus=Lus10006580.g ID=Lus10006580.BGIv1.0 annot-version=v1.0 MRGGGRSGGRGVGGRGGAGNYTNPCLTMHQPWASLLVHGIKRIEGRSWPAPIRGRLWIHAASKVPEEETIKAMEDFYREIYALNGVTDIKFPEHYPVSRL LGCIEVVGCLKLDEVANWEAIPEGVRVEGQTDFCWLCESPQKLLIPFEMRGNQGVYNLEKKIFESALRGLVPVKGPMPVKFPLPNPQDRFSLCPGSVSSQ TRLNPSEVEKSSSLIAAIDSARAAATQFSKKDQNHNSSPVENSSSTRQYELRSKSSSSEQSEIPATNSPDVCDEKDEPKMLKESKPDNQVQPEESSSLRI NSQAGLDQRPRASSKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20410			RNA-binding ASCH domain protei...		Lus10006580 [exp]	0	1
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001834 [exp]	1.7	0.8955
AT2G16790			P-loop containing nucleoside t...		Lus10037373 [exp]	5.3	0.8629
AT5G47090			unknown protein		Lus10035063 [exp]	8.2	0.8802
AT3G52390			TatD related DNase (.1.2)		Lus10021262 [exp]	18.8	0.8361
AT2G37480			unknown protein		Lus10003982 [exp]	21.6	0.8766
AT4G30230			unknown protein		Lus10036511 [exp]	21.7	0.8742
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	23.0	0.8863
AT5G11500			unknown protein		Lus10037899 [exp]	25.3	0.8790
AT5G11500			unknown protein		Lus10038625 [exp]	25.7	0.8437
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	26.2	0.8809

Compare expression of checked genes

Lus10006580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.