Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10770 1219 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G27730 967 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 950 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 903 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT5G64410 855 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT1G09930 851 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT4G16370 780 / 0 ATOPT3 oligopeptide transporter (.1) AT4G26590 772 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 749 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT1G65730 44 / 0.0003 YSL7 YELLOW STRIPE like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041897 [exp] 1094 / 0 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022372 [exp] 1006 / 0 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10028445 [exp] 924 / 0 AT4G10770 920 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10007770 [exp] 871 / 0 AT4G27730 936 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10022543 [exp] 797 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10039075 [exp] 779 / 0 AT4G16370 1304 / 0.0 oligopeptide transporter (.1) Lus10038784 [exp] 774 / 0 AT4G16370 1302 / 0.0 oligopeptide transporter (.1) Lus10031978 [exp] 772 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 764 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145500 [exp] 1246 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 1091 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 1020 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 1015 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.009G079500 [exp] 875 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.005G150400 [exp] 870 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 845 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.016G004800 [exp] 796 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G369700 [exp] 776 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G006500 [exp] 774 / 0 AT4G16370 1305 / 0.0 oligopeptide transporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10006581 pacid=23149183 polypeptide=Lus10006581 locus=Lus10006581.g ID=Lus10006581.BGIv1.0 annot-version=v1.0 ATGCGTGAAGAAGCAGAATCAGATCCCAGCAGCAGCAGCAGCTACGACATCAGATCCCCACTCTTAACCAAAAATGAAACAGAGGAACATGATGGCGGCG GCAAGGAGGAGGACCCCACTGACCTCCCTTCATCATCATCGTCAGCATCGGAATCATCAGAAGATTCAGAAAACTCGCCGGTGTTACAAGTGGCGATGAC GGTAGCCACCACCGACGACCCGACCCTGCCGGTACTCACATTCCGGATGTGGGTCCTGGGGACTCTTTCCTGCGTGTTGCTCTCGTTCCTGAACCAGTTC TTCTGGTACAGAACAGAGCCGCTGACGATCACCGCCATCTCCGCACAGATAGCGGTGGTTCCGCTCGGGCAGCTGATGGCTGCCCAAATCACCGACCGGG TCTTCCTCCGGGGCACCCGGTTCGAGTTCACACTCAACCCGGGTCCGTTCAATGTGAAGGAGCACGTGTTAATCACAATATTCGCGAATTCAGGGGCCGG GAGCGTTTACGCCATCCATATCGTAACGGTGGTGAAGGCGTTTTATGGGAAGAATCTCACCTTCTTCGTTTCCCTCATTGTCGTCGTCACCACCCAGGTG CTGGGATTTGGGTGGGCCGGGATATTTAGAAGGTATTTGGTTGAGCCGGCGGCAATGTGGTGGCCGGCGAATCTGGTTCAGGTCTCCTTGTTCAGGGCCT TACACGAGAAGGAAGAACGGCCCAAGGGGGGAGTGACACGTAACCAGTTTTTCCTCATTGCATTCACCTGCAGCTTTGCCCACTACATATTCCCAGGCTA CCTATTCCAAATGCTAACTTCCATGTCTTGGGTTTGCTGGATCTTCCCAACCTCCGTGCTAGCCCAACAACTCGGATCGGGCCTAAATGGGCTTGGACTC GGTGCCATTGGATTTGACTGGTCCACAATCTCTTCTTACCTAGGAAGCCCACTCGCCAGCCCGTGGTTCGCCACTGCCAACGTGGGCGTTGGCTTCGTGT TCATCATGTACGTCCTCACTCCCATTGCCTACTGGCTCAACTTCTACAATGCAAAGACGTTCCCGATATTCTCCGACAGCATGTTCACGGCCGCCGGACA GGAGTACAACATCACTTCCATTATCGATTCGTCGTTTCATCTCGACCTCGCCGCGTACGAGAAGGAAGGCAATCTTTACCTCAGCACGTTCTTCGCCATG ACTTATGGAGTTGGGTTTGCTGCTCTTACTGCCACCATTGTTCACGTCGCTATGTTCCACGGAAGGGAGATATGGGAACAGAGCAGAGCAAGCTTTGGGG AGAATTCAGTCGACATACACACAAAACTAATGAGGAGATACAAGCAAGTACCAGAATGGTGGTTCTGGTGCATACTCTTCACAAACATAGGAGCTACGAT TTTCGCCTGCGAGTATTATAACGAGCAGCTTCAGCTGCCGTGGTGGGGGGTTCTGTTGGCTTGCACCATCGCCATTGTCTTCACTCTCCCAATTGGCATC ATCACTGCAATCACCAACCAGACTCCTGGATTGAACATCATAACAGAGTACATAATAGGATATGTGTACCCTGGTTACCCTGTAGCAAACATGTGCTTCA AAGTGTATGGATATATAAGCATGACTCAAGCCATTACTTTCCTCCAAGACTTCAAACTTGGCCACTACATGAAGATCCCTCCTAGAACCATGTTCATGGC CCAGGTAGTAGGAACACTGATAGCATGCTTGACCTACTTAAGCACAGCATGGTGGCTAATGGAAACAATTCCAGATATATGCCAACGTACGGCCACAAAC ACCGTATGGACATGCCCGGGAGACACAGTGTTCTACGATGCATCCGTAATATGGGGACTAATCGGCCCCCGTAGGATATTCGGAGACCTAGGATTCTACT CTTCCGTAAACTGGTTCTTCCTAGGAGGAGCAGTCGCCCCGGTTCTGGTCTGGCTAGCCACGAGGGCATTCCCCAGGCAAGAATGGATAAGGCTCGTAAA CATGCCGGTCCTCATTGGGGCTACTGGCTCGATGCCTCCGGCCACAGCGGTCAACTACACAAGCTGGGTGCTGGCAGGGTTTGTGTCAGGGTTCATGGTG TATAGGTACAGGCCAGAGATGTGGCAGAGGTACAACTACGTGTTGTCCGGGTCGCTCGATGCCGGGCTGGCGTTTATGGGAGTGATGCTGTATTTGTGTT TGGGATTGGAAAATGTGAGCTTGGATTGGTGGGGGAATGATCTTGATGGTTGTCCTTTGGCTTCTTGTCCTACTGCTCAAGGCATTGTCGCTCAAGGATG TCCTGTTTCTAGATGA
AA sequence Show only first row Show all	>Lus10006581 pacid=23149183 polypeptide=Lus10006581 locus=Lus10006581.g ID=Lus10006581.BGIv1.0 annot-version=v1.0 MREEAESDPSSSSSYDIRSPLLTKNETEEHDGGGKEEDPTDLPSSSSSASESSEDSENSPVLQVAMTVATTDDPTLPVLTFRMWVLGTLSCVLLSFLNQF FWYRTEPLTITAISAQIAVVPLGQLMAAQITDRVFLRGTRFEFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTVVKAFYGKNLTFFVSLIVVVTTQV LGFGWAGIFRRYLVEPAAMWWPANLVQVSLFRALHEKEERPKGGVTRNQFFLIAFTCSFAHYIFPGYLFQMLTSMSWVCWIFPTSVLAQQLGSGLNGLGL GAIGFDWSTISSYLGSPLASPWFATANVGVGFVFIMYVLTPIAYWLNFYNAKTFPIFSDSMFTAAGQEYNITSIIDSSFHLDLAAYEKEGNLYLSTFFAM TYGVGFAALTATIVHVAMFHGREIWEQSRASFGENSVDIHTKLMRRYKQVPEWWFWCILFTNIGATIFACEYYNEQLQLPWWGVLLACTIAIVFTLPIGI ITAITNQTPGLNIITEYIIGYVYPGYPVANMCFKVYGYISMTQAITFLQDFKLGHYMKIPPRTMFMAQVVGTLIACLTYLSTAWWLMETIPDICQRTATN TVWTCPGDTVFYDASVIWGLIGPRRIFGDLGFYSSVNWFFLGGAVAPVLVWLATRAFPRQEWIRLVNMPVLIGATGSMPPATAVNYTSWVLAGFVSGFMV YRYRPEMWQRYNYVLSGSLDAGLAFMGVMLYLCLGLENVSLDWWGNDLDGCPLASCPTAQGIVAQGCPVSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10006581 [exp]	0	1
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	1.0	0.8112
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	4.0	0.7733
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10036221 [exp]	6.0	0.7484
AT2G38610			RNA-binding KH domain-containi...		Lus10019116 [exp]	9.9	0.7789
AT5G06260			TLD-domain containing nucleola...		Lus10021306 [exp]	11.5	0.7439
AT3G28430			unknown protein		Lus10018448 [exp]	14.8	0.7430
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	17.5	0.7657
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Lus10006152 [exp]	20.4	0.8022
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	20.9	0.7863
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	28.6	0.7958

Compare expression of checked genes

Lus10006581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.