Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17010 165 / 5e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001160 [exp] 248 / 7e-86 AT4G17010 166 / 3e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038600 [exp] 189 / 1e-62 AT4G17010 140 / 4e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006582 pacid=23162684 polypeptide=Lus10006582 locus=Lus10006582.g ID=Lus10006582.BGIv1.0 annot-version=v1.0 ATGAACAAGTTACTGGACTTTGGGAGGAAGGCTTTTTTCTACGTGAGGGTTCTTTCAGGGTATGAAGAACGCCGAATCCGGAATTATAGGTTGGAGCTGG AGAAGCGTCTTCAACAGGCACAGGAGAAAAAGTTGGCCTTGAGAAAGATCCCTGAGCAGACTATACTTTCAGAAGTTCGCTCTATGGTTGAGGAAATGCA AGCTCTGAACAAGAAGCTGGAAGAAACTGAGGCTCAAATTGATGACTACTTCAAGCCAATTAACATGAAAGCTGAGATCCTAATGAAACAACAGCTTGAG GGGGAGGAGAGGACAATGACGGAGATGATGAAGGTTATGCAAACTAAAGCTTTGATTGAGGAAGCCCAAGCTGCTAGTACATCAATATCAGACCGACAAG CAGGAAATACAATCTCCCCCAACCAAGCAGGATAA
AA sequence Show only first row Show all	>Lus10006582 pacid=23162684 polypeptide=Lus10006582 locus=Lus10006582.g ID=Lus10006582.BGIv1.0 annot-version=v1.0 MNKLLDFGRKAFFYVRVLSGYEERRIRNYRLELEKRLQQAQEKKLALRKIPEQTILSEVRSMVEEMQALNKKLEETEAQIDDYFKPINMKAEILMKQQLE GEERTMTEMMKVMQTKALIEEAQAASTSISDRQAGNTISPNQAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17010			unknown protein		Lus10006582 [exp]	0	1
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	2.0	0.8854
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10003760 [exp]	3.5	0.8460
AT2G04900			unknown protein		Lus10001166 [exp]	4.9	0.8498
AT5G57860			Ubiquitin-like superfamily pro...		Lus10036598 [exp]	5.0	0.8314
AT1G76200			unknown protein		Lus10016001 [exp]	8.0	0.8379
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10013605 [exp]	9.5	0.8070
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10004085 [exp]	14.0	0.7495
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Lus10005796 [exp]	18.3	0.7724
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	20.0	0.7920
					Lus10007667 [exp]	21.2	0.8192

Compare expression of checked genes

Lus10006582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.