Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05960 891 / 0 ARM repeat superfamily protein (.1.2) AT2G41830 672 / 0 Uncharacterized protein (.1) AT5G21080 531 / 1e-172 Uncharacterized protein (.1) AT5G26850 464 / 2e-147 Uncharacterized protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001161 [exp] 1749 / 0 AT1G05960 999 / 0.0 ARM repeat superfamily protein (.1.2) Lus10026298 [exp] 691 / 0 AT2G41830 1083 / 0.0 Uncharacterized protein (.1) Lus10019717 [exp] 590 / 0 AT2G41830 1012 / 0.0 Uncharacterized protein (.1) Lus10042372 [exp] 566 / 0 AT2G41830 840 / 0.0 Uncharacterized protein (.1) Lus10029842 [exp] 391 / 1e-119 AT5G26850 1115 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10020697 [exp] 382 / 2e-116 AT5G26850 1103 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10016400 [exp] 266 / 9e-75 AT5G21080 538 / 5e-175 Uncharacterized protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G128000 [exp] 1194 / 0 AT1G05960 1014 / 0.0 ARM repeat superfamily protein (.1.2) Potri.016G055100 [exp] 732 / 0 AT2G41830 1184 / 0.0 Uncharacterized protein (.1) Potri.006G052100 [exp] 728 / 0 AT2G41830 1110 / 0.0 Uncharacterized protein (.1) Potri.013G008500 [exp] 510 / 6e-165 AT5G26850 1132 / 0.0 Uncharacterized protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006583 pacid=23162690 polypeptide=Lus10006583 locus=Lus10006583.g ID=Lus10006583.BGIv1.0 annot-version=v1.0 ATGGGGGTTATGTCAAGGCGAATTTTACCCGCCTGCGGTAATCTCTGTTGCTTGTGTCCTTCATTGAGAGCAAGTTCAAGACAGCCAGTTAAGCGATACA AGAAACTGCTCGCTGACATATTCCCTAAGAAGCAGGAAGCTGAACCGAATGATAGGAAAATTGGGAAGCTGTGCGAGTATGCTGCAAAAAACCCATTACG GATTCCTAAGATTGCCGAGACCCTGCAACAAAGATTTTATAAAGAGCTGCGTCATGCACACTTTGGGTCTGTGAAAGTAGTAGTGTACATCTACAGGAAA TTATTATTTTCCTGCAAGGACCAAATGCCATTATTTGCTAGTAGTTTGTTGGAAATCTTGCAGACTCTTCTGGAGCAAACTCAGCGGCTAGATTTGCAGA TTTTAGCTTGCAATTCTTTTGGTGATTTTATTAGCAGCCAGATAGATGGGACACACATGTTCAACTTAGAGGGTGTCATTCCCAAGCTCTGTAGATTGTC TCAAGTTGAGGGAGATGATGAAAATGCTTTGTGCTTGCGTGCAGCAGGGCTTCAAGCTCTTGCTTCCATGGTGTCTTTCATGGGCGAGCACTCTCATATA TCAATGGATTTTGACAATATTATATCAGTCACATTGGAGAACTACATCGATTTCGAAATGAATGCAGAAAATTGTGAGGAGCGGTGGACTCAGGAAGTAC GAAAATCAGGAGATAATGGTTCATCTTTCCCAGATATCAGTAAAAATGTTTCGTTCTCAAACTTGAATACCAAGTCTCAACTGTTCCCCTCTGGTGATAC TTCAAAGGACCCGTCTTACTGGTCTAGAGCTTGCTTATGTAATATGGCCAGATTGGCAAACGAAGCGTCAACAGTACGACGTATACTTGAACCACTTTTT CATAACTTTGATGTCAATAACCGTTGGTCTCTTCAAAGCGGAGTTGCATGCTCCGTTTTGATGCATTTACAGTCCCTTTTAGAGGAAACAGGTGACAACT CACATCTTTTATTGTCAAACTTGATCAAGCACTTGGATCATAAGAATGTCGCAAAGCAACCTCTTGTGCAGATAGATATCGTTAATATTGCTGAAACAAT CGGATGTAATTCAAAGCAACAGTGCACTGTAACCCTCGTTGGTGCAATCTCTGAGCTATTGAAACACTTGAGAAAGTGTTTACAGATTTCAGCTGGATTA TCCAGCCAAAAGGATGCCCTTGATAAATTAAATCTGGATCTTCAGTCTGCATTAGAGAAATGCATCTTACAGCTCTCAAACAAGGTTGGAGATGTGGGGC CGATACTTGACATGATGGCTGGATTCTTAGAGAATGTTTCAAACACTGCTTCTGTAGCTCGAACCACTATCTCCGCGATCCTCCGAACATCTCATATTTT AGCTGCTGTTCCAAACATATCATACAATAAGAAGGCTTTTCCTGATGCTCTATTCCATCAACTACTCATTGCTATGGCCCATTCAGACTACAAAGTACGA GTTGGAGCACACCGTATATTTTGTATTGTGCTCATACCCTCTTTAGTTTCTCCATTTTCAGATGATAAGAATGCATCTGCGACCGAATCTAGAAGTTTTG GTTCATCGCAAAGGTTAAAGACTGAAAGTTTCTCCACTCGCCGTAATGGTAACGATAAAGCAGCTGGTGCTAATGGGAAGTTGTTTGAAGGAGATATTGA ACTCGTTTGTGTGACTGAAAAAGCATCTAAAAAGAGTAATCTACTTTGTCATCCAAAGATCTTAAAGCAGTCTATATTTGACGGAAAAATGCTTACCACC CTACGATTGAGCAGTCATCAAGTTAGTCTTCTGCTGTCATCAATATGGGTTCAAGCAATTAATGTGGAGAATGCACCAGCAAACTTTGAAGCTATGGCTA ATACTTATTATATTGCTTTGGTCTTTAGTAGATCTAAGGCAGCCAGTCATATTGCTCTGGTTCGATGTTTTCAGCTTGCATTTTCTTTAAGAAGCATCTC TTTGGGCGAAGAAGCCGGTCTGCAACCTTCACGGAGAAGGTCTCTCTTCACATTGTCATCGTGCATGCTATTGTTGTCAGCGAAGGCTGGGGATGTTCAA GAGCTAATTCCTTTTGTCCAAGCATCACTTAAAGCGGAAACTGCTGATCCTTATTTGGAGTTAGTTGAGGAAGTCAAGTTGCTGGGTATTGTTCAGGGTG TCCATGTGAAATCTGGCGTACAGAAAATAGTGTATGGTTCAGAGGAGGATGATTCCGCTGCTCTGGTATCACTCTCATCTGTGGAAGCAAATGACCAGCC ATTGAAGGAAACTGTGATATCTCATTTCATGACCAAGTTGTCGAAATTGTCAGAGGATGAATTGGTAGAAATCAGACAACAACTTCTACAGGGATTTTCA CCTGATGATGCATATCCATTAGGTGGTCCGTTATTTATGGAGACACCAAGGCCATGTTCTCCTCTTAATCAATTGGAGATTTATTCCCTTGAAGAGGTAA TACATGAATCTGCCATGACTGATGACGAAGTTCATACTGACGCTAATGGGAGCCAGTCTGATCGTAAAACATCTCTGACTGCTAACACTGCAGACATCTT AAGTGTTCATGAACTTCTTGACTCTGTGTCGGAAACTGCCCGGCAAGTAGCAAGCTCTCAGGTTTCCTACAGTATGGTACCTTACGACCAAATGATGACA CAATGCGAAGCCCTTGTATCTGGTAAACAACAGAAGATGTCGATGCTTCATAGCCTTAAACATCAACATGATACCAGGATATATCCTAGTGAAGATGAAA GGAAAAGCAATACAGAAGTAGATACAACAGGAGGTTCAATTCTGGAGTCTGAAGGAGTGAAATCGGTGCTCAAACGAATTCTGGAGTCCGAAGGAGTGAA ATCGGTGCTCAAACGAATTCTAGAGTCTGAAGGAGTGAAATCGGTGCTCAAACGAATTCTGGAGTTTGAAGGAGTGAAATTGGTCCTCGAACGAGGAAAT CATAACTGA
AA sequence Show only first row Show all	>Lus10006583 pacid=23162690 polypeptide=Lus10006583 locus=Lus10006583.g ID=Lus10006583.BGIv1.0 annot-version=v1.0 MGVMSRRILPACGNLCCLCPSLRASSRQPVKRYKKLLADIFPKKQEAEPNDRKIGKLCEYAAKNPLRIPKIAETLQQRFYKELRHAHFGSVKVVVYIYRK LLFSCKDQMPLFASSLLEILQTLLEQTQRLDLQILACNSFGDFISSQIDGTHMFNLEGVIPKLCRLSQVEGDDENALCLRAAGLQALASMVSFMGEHSHI SMDFDNIISVTLENYIDFEMNAENCEERWTQEVRKSGDNGSSFPDISKNVSFSNLNTKSQLFPSGDTSKDPSYWSRACLCNMARLANEASTVRRILEPLF HNFDVNNRWSLQSGVACSVLMHLQSLLEETGDNSHLLLSNLIKHLDHKNVAKQPLVQIDIVNIAETIGCNSKQQCTVTLVGAISELLKHLRKCLQISAGL SSQKDALDKLNLDLQSALEKCILQLSNKVGDVGPILDMMAGFLENVSNTASVARTTISAILRTSHILAAVPNISYNKKAFPDALFHQLLIAMAHSDYKVR VGAHRIFCIVLIPSLVSPFSDDKNASATESRSFGSSQRLKTESFSTRRNGNDKAAGANGKLFEGDIELVCVTEKASKKSNLLCHPKILKQSIFDGKMLTT LRLSSHQVSLLLSSIWVQAINVENAPANFEAMANTYYIALVFSRSKAASHIALVRCFQLAFSLRSISLGEEAGLQPSRRRSLFTLSSCMLLLSAKAGDVQ ELIPFVQASLKAETADPYLELVEEVKLLGIVQGVHVKSGVQKIVYGSEEDDSAALVSLSSVEANDQPLKETVISHFMTKLSKLSEDELVEIRQQLLQGFS PDDAYPLGGPLFMETPRPCSPLNQLEIYSLEEVIHESAMTDDEVHTDANGSQSDRKTSLTANTADILSVHELLDSVSETARQVASSQVSYSMVPYDQMMT QCEALVSGKQQKMSMLHSLKHQHDTRIYPSEDERKSNTEVDTTGGSILESEGVKSVLKRILESEGVKSVLKRILESEGVKSVLKRILEFEGVKLVLERGN HN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05960			ARM repeat superfamily protein...		Lus10006583 [exp]	0	1
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024282 [exp]	4.4	0.9224
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	6.0	0.8922
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10015655 [exp]	6.2	0.9151
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	6.3	0.9057
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10034941 [exp]	8.1	0.8915
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	9.2	0.8690
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Lus10008461 [exp]	10.0	0.8841
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	10.2	0.9014
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	10.7	0.9034
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	11.7	0.8867

Compare expression of checked genes

Lus10006583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.