Plant FIBer expression Database

Lus10006584 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013105
[exp]
52 / 1e-08 AT3G01360 53 / 6e-09 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2)
Lus10010587
[exp]
46 / 3e-06 AT5G56170 99 / 2e-26 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1)
Lus10005027
[exp]
46 / 6e-06 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10006584 pacid=23162692 polypeptide=Lus10006584 locus=Lus10006584.g ID=Lus10006584.BGIv1.0 annot-version=v1.0
ATGACGAAGACGACGGATCCGCAAAATTCTATCAGTAGCGGTGGTCCGATGAAACTCCGACGAATCTCCAACGACACGAGAATGAAAGTAAGAAGAGATG
GTGGTGATGTTCAGTATCTCAAACTCTATCTTCACCTCTCAATTCTTCCCCCCCAATCTCCTCTGATATGTCCTCCCATCTCCGGTTATCTACTTTTATG
GCACCGACCAGGTAAAGCATTCGATTCTCTTCCTCTCCTCTTGGTTCCTCTTGTCATCTATGATTTTTATCTCTGTATCGGCACTGACTCGCTTCTACTC
TCTTTGGATCTAAACGACGGAGCTACGGAGGATCAGAGGGCTCTGCCTAAACATCTAACAGAGGTTGACATCAGTGTTCGGGAAGGCGTGCCTCCGCGGC
CGCCTAGGCGGAAAAATCGGCGGGGCAGACTGATTAAGGCGGATCGTCGCCGAATCGTCGCCGAATCGTCGCCTCGAGCGCCTCCGCAGCGCCGAATCGG
AAAAGGCGGTGTCGCCGCGTTTAAAAAAAGAAGGAAACAGGAGTCAACGCCTCACCCATCGTCGTCCTCGGGCTCGATCGGCGCCGTCTCCTCCTTCATC
TCCGACGCATCTCCTCCTTTCATCTCCGACTTCGTCTCCTCTGTCGGAGGGCAAGACAGTGGGAGTTCTTGTGAGGGACGGGATCGGAAGTGA
AA sequence
>Lus10006584 pacid=23162692 polypeptide=Lus10006584 locus=Lus10006584.g ID=Lus10006584.BGIv1.0 annot-version=v1.0
MTKTTDPQNSISSGGPMKLRRISNDTRMKVRRDGGDVQYLKLYLHLSILPPQSPLICPPISGYLLLWHRPGKAFDSLPLLLVPLVIYDFYLCIGTDSLLL
SLDLNDGATEDQRALPKHLTEVDISVREGVPPRPPRRKNRRGRLIKADRRRIVAESSPRAPPQRRIGKGGVAAFKKRRKQESTPHPSSSSGSIGAVSSFI
SDASPPFISDFVSSVGGQDSGSSCEGRDRK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10006584
[exp]
0 1
AT5G25250 SPFH/Band 7/PHB domain-contain... Lus10001944
[exp]
3.5 0.7758
AT1G60170 EMB1220 embryo defective 1220, pre-mRN... Lus10027881
[exp]
11.1 0.6430
AT1G50420 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) Lus10016892
[exp]
11.3 0.7653
AT2G18660 AtPNP-A, PNP-A,... plant natriuretic peptide A (.... Lus10042436
[exp]
13.1 0.7254
AT5G59380 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.... Lus10029564
[exp]
14.0 0.7368
Lus10015310
[exp]
15.5 0.7213
AT4G23160 CRK8 cysteine-rich RLK (RECEPTOR-li... Lus10031577
[exp]
20.0 0.7177
Lus10021453
[exp]
21.0 0.7085
AT4G12320 CYP706A6 "cytochrome P450, family 706, ... Lus10032214
[exp]
21.4 0.7043
AT4G36950 MAPKKK21 mitogen-activated protein kina... Lus10034246
[exp]
24.6 0.6878

Lus10006584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.