Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04730 211 / 3e-68 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT4G14550 206 / 4e-66 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G23050 202 / 2e-64 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 189 / 1e-59 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT5G65670 172 / 1e-51 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT2G22670 167 / 7e-50 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT4G29080 166 / 9e-50 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT5G43700 124 / 5e-35 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT3G23030 119 / 6e-33 AUX_IAA IAA2 indole-3-acetic acid inducible 2 (.1) AT1G04240 119 / 6e-33 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015907 [exp] 336 / 1e-116 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10039414 [exp] 195 / 2e-61 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10019241 [exp] 170 / 5e-51 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10034962 [exp] 168 / 2e-50 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10012984 [exp] 165 / 5e-49 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10011583 [exp] 162 / 5e-48 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2) Lus10014731 [exp] 160 / 7e-48 AT3G04730 241 / 4e-80 indoleacetic acid-induced protein 16 (.1) Lus10028222 [exp] 156 / 4e-46 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10042929 [exp] 157 / 2e-45 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041400 [exp] 241 / 7e-80 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.005G053900 [exp] 238 / 1e-78 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.002G044900 [exp] 215 / 1e-69 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 211 / 3e-68 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.008G161200 [exp] 206 / 7e-66 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.010G078300 [exp] 201 / 1e-63 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.003G051300 [exp] 181 / 4e-55 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.002G108000 [exp] 180 / 2e-54 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.001G186100 [exp] 172 / 2e-51 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.006G161400 [exp] 158 / 2e-46 AT4G29080 293 / 2e-98 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10006585 pacid=23162687 polypeptide=Lus10006585 locus=Lus10006585.g ID=Lus10006585.BGIv1.0 annot-version=v1.0 ATGACGACGGCCGCGGAACCTGATCATCACAAGTACGTAACGATTAATTTTGAGGAGACAGAGCTCCGGTTGGGTCTTCCAAGTGTCAAAGGAGATCAAG TGCTGTTGGCCAGGAGTAGCGGTGGCAAGAGAGGTTTCTCCCAGACCGTTGATCTCAAGCTCAACTTATCCTCCTCCTCCTCCTCCATCGACGGTGGAGA TGACTTGTCCACAAATCAAGAGAAGATGAAGGATACTTCTTCTTCTGCTGCTGCAAATTCTAACAACGATCCCGCTAAGCCGCCTGCCAAACTAGATGCC AATAAGAGAACAGGGCAAAGAACTGAACTTCTAAGCTGGGTTGTGCAAGTGAGACTTCGTTCCTTTGTTGATCCGCTTAAAGAGTTAAATAAAAGAAGCA AAGACACCACCAACAAAAAAAATAAAAAGAGAGGGAGCGGGCCGGCGGCCGCCACAACATCATCCAGCAGCGCAGCTTTCGTGAAGGTGAGCATGGATGG AGCTCCATACCTTCGGAAAGTTGACTTGAAACTCTATCAGAGCTACCCTCAACTCTCGGAGGCCCTGGCTAAAATGTTTAGCTCATTCAGCACTATCGCC AACTGCGGCCCAAATGGGATGAAGGATTTCATGAGTGAGAGCAAGCTGGTCGATCTATTGAACAGTTCTGAGTATGTACCCACTTATGAAGACAAAGATG GGGATTGGATGCTTGTTGGAGATGTTCCTTGGAAGATGTTCGTAGAGTCATGCAAGCGCTTGAGATTAATGAAAGGGTCTGAAGCAATTGGTCTTGCTCC TAGAGCAGTGGAGAAGTGCAAGAATAGAAGCTGA
AA sequence Show only first row Show all	>Lus10006585 pacid=23162687 polypeptide=Lus10006585 locus=Lus10006585.g ID=Lus10006585.BGIv1.0 annot-version=v1.0 MTTAAEPDHHKYVTINFEETELRLGLPSVKGDQVLLARSSGGKRGFSQTVDLKLNLSSSSSSIDGGDDLSTNQEKMKDTSSSAAANSNNDPAKPPAKLDA NKRTGQRTELLSWVVQVRLRSFVDPLKELNKRSKDTTNKKNKKRGSGPAAATTSSSSAAFVKVSMDGAPYLRKVDLKLYQSYPQLSEALAKMFSSFSTIA NCGPNGMKDFMSESKLVDLLNSSEYVPTYEDKDGDWMLVGDVPWKMFVESCKRLRLMKGSEAIGLAPRAVEKCKNRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	0	1
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10002723 [exp]	1.7	0.8816
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003207 [exp]	3.2	0.8641
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	3.5	0.8919
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10015907 [exp]	4.9	0.8689
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	5.3	0.8884
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	6.6	0.8792
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	6.7	0.8775
AT5G06470			Glutaredoxin family protein (....		Lus10013597 [exp]	6.9	0.8556
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	7.3	0.8652
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	9.8	0.8745

Compare expression of checked genes

Lus10006585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.