Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04740 2038 / 0 MED14, SWP, ATMED14 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015908 [exp] 3349 / 0 AT3G04740 2142 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041201 [exp] 2566 / 0 AT3G04740 1281 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1) Potri.005G053700 [exp] 2564 / 0 AT3G04740 1287 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08638 [flax] [poplar] Med14 Mediator complex subunit MED14
Representative CDS sequence Show only first row Show all	>Lus10006586 pacid=23162683 polypeptide=Lus10006586 locus=Lus10006586.g ID=Lus10006586.BGIv1.0 annot-version=v1.0 ATGGCGGAGTTAGGGCAGCAAACGGTCGACTTCTCCACTCTTGTGAGTCGGGCTGCGGAGGATTCCTTCCTTTCTTTTAAGGATTTGGTGGAAAAATCCA GGACGGCTGACGAGTCTGATTCCGAGAGGAAGATTGGACTTCTCAAGTACTTGGTTAAGACCAGGCAGCGTATGCTCAGGCTTAATGTATTAGCTAAGTG GTGCCAACAGGTTCCATTGATACAGTACTGTCAGCAACTACAATCTACAGTAGCTAGTCATGATACTTGCTTTACACAAGCCGCAGATTCATTGTTCTTT ATGCATGAAGGATTGCAGCAAGCTCGTGCTCCCATTTATGATGTCCCATCTGCTGTCGAAGTACTCCTTACTGGATCCTATCAGCGGTTGCCAAAGTGTG TGGAAGATATAGGTCTACAGGGCACGTTAGGCGGGGATCAACAGAAGCCAGCTCTCAGAAAGCTAGACACTCTCGTGCGGACTAAGTTACTTGAAGCTTC ATTGCCCAAGGAGTTCTCTGAGGTAAAAGTCTCTGATGGAACGGCCATGCTTCGGGTAGACGGTGAATTTAAAGTACTAGTTACTCTTGGTTACCGAGGA CACTTATCGTTGTGGAGAATATTACATTTAGAGTTGGTTGTTGGTGAAAAAAGTGGCTCTGTGAAAATGGAAGAGTTACGCAGGTATGCCCTTGGTGATG ATTTGGAACGCAGAATGGCAGCGGCAGAAAACCCATTCGTGATATTGTATTCGGTGCTCCACGAGCTCTGTGTTTCTCTGGTTATGGATACCGTGATAAG ACAAGTTCAAGCATTGCGTCTAGGGAGGTGGAGGGGGGCAATTCGTTTTGAGATAATATCTGATGGTGGTACTTTCTCACAATTAAATCAAGATGGAGAA GCTGATTCTGCAGGTATGCGGATACCTGGGTTGAAAATTATGTACTGGCTGGACCTGGATAAGAATTCTGGTGCATTGGATTCTGGGGCAAGCCATGTTC TAAAAATTGAGCCAGGGGCAGATCTACAAATAAGGTGTACGCACGGCACATTTGTTATAGATCCATCCACAGGAAGAGAAGCAGAGTTTTCTATCGACCA ACGCTGCATTGATGTTGAGAACTTGTTGATGAGAGCAATATGTTTTAACAGATATACTCGGCTTCTTGAAATTCAGAAAGAGCTGGGGAAAAACATCCAG ATCAGTCGTGCTGCAGGAGATGTCGCCCTTCAGCCCCACATGGATGAACCAGCTTTTTACCATATAAAGAAGCTGTCTCTGTCTGAAGGCAGGACATATG AGGCTCAAGAAGTGTTATGTGTGCGTGCTTACGGCTCATCATTTTTCATGCTTGGGATAAATATAAGGACTGGTCGCTTTCTGATCCGTTCAACCCAGAA TGTACTCCCACCCACAGTGTTGTCAGAATGTGAAGAAGCTCTAAATCATGGAAGCATCACTGCAGCTGAAGTTTTTACTAGCTTGCGAAACAAAAGCATC TTGCACTTATTTGCTTCTATAGGCAGGTTTTTAGGGCTGGAGGTGTATGAACATGGTTCTGATGCTGTTAAAGTGCCTAAGAGTGTTTTGAATGGCTCAC CTATGTTGCTAATGGGGTTCCCTGATTGTGGGAGCTCATATTTCTTGCTAGTGCATCTTGATAAGGATTTCAAATCTCAGTTTGCATTGCTAGAGACACA GCCTGATCCATCAGAAAGAGTGTATGCTGGTGATGTAAATCAAGTAGTGCGTGTCAAGAAGATTGATACTGGCCGTATGCAGATGCTTGAAGATGAATTG AATCTAAGTCTGCTTAACTTGGAAAAGTTGAGTTCGTTGTTACCGAAAGCTGGTGGTGGTCCTCTTCAAACTTCTGAACATGGCTTGACTGACTTCAGCC TTGAGGGTCCTCTGCAAATCGCCGGCGATGCACCTTCCAGTTTTTCATCTATTGTTGATGAAGTATTTGAGCTGGAGAAAGGAGCTTCTGTACCTGCAAT GGGCGTAGAGAATCTCCCATCTTCAATCAATCTATTGTCAAATTATGGTTCTGTTCCTACCATTATGCATGGTGTTAAAGTTGGATCTCTTCCTAAGTGG GAAGGACAGATGAATAATATGAATGCGTTAAAAAATTCCAGTTTGGGTTCACACTACAATGGTTCTTTTTACCAGTCAAACAATTTGAAGGGTCACTCAA GTTCATTCGGTTCATTATCTCCAGCCATTGGGAGAAATTCCAACGTGAAAAAGCTGTCAGGTTCAAAATCTGACCAAGATTTGGCTTCACTTAGATCTCC CAACTCTGTTGAGGTGACTTCAAATGTTTCAATGGATGAAGATCATCTGAGACTTCTGAATAACAGCGTCGTGGATGGATTGTCTGGAAGGTCAGCACGA CTATTATCTCCTCCCCAGACCTCAGGTTCTCAAGTTTCTCCAGCTAGTGTGAAATCTAATGGACTCAGAAGCATTCTTCCTGGGTTGTCAGCTGGAACCA CAAGAGTAAATGGACCAGGCTCTTTAGCTACAACTCCCGTATCCCAGGAAAAAGGAGATGGTTCCATTGATGACATGTCCAAACATGAAAAAAGTCTGAG GAAGCGGACGATTTCAGATGTGTTGAGTTTGGTTCCTTCTCTGCAAGATATAGATGCAAGAGCAGGATTGTTCAAGAAAAGGAAAACCTTCGAATTGTCT CAATCTCAACAGCTGTTATCAAAGACCCTTACCTCATCAGAAACGGTGAATAAAAGTGAAGAACTCAACTACGGGGATCTTCTGGCTGAAGCTAACATAG GCAACATTCCCTCTAGCATTTACATTTCTTCGCTTCTTCATGTCATTAGACATTGTTCACTTTGCATCAAGTATGCCAGACTTACGAGCCAGATGGAGGC ACTTGATATTCCTTATGTAGAAGAAGTGGGCTTGAGAAGTGGATCTTCAAATATATGGTTTCGACTCCCATTTGCACGAGGTGATCCATGGCAACACATA TGCTTACGGCTTGGAAGACCTGGAAGCATGTACTGGGATGTCAAAATAAATGATCAGCACTTCAGGGACCTTTGGGAACTTCAAAAGGGATGCAGTAGCA CTCCTTGGGGCTCTGGGGTTCGTATTGCTAATTCATCTGATGTGGATTCCCATATTCGTTATGATTCGGAAGGGGTAGTCCTCAGCTATCAGTCAGTTGA GAGTAATAGTATAAAGAAGCTAGTTTCAGATATTCTCCGACTTTCTAATGCTAGAACATTTTCTCTTGGGATGTGGAAAATTCTTGGAGTAAGGGAAGAT GAAATTTTGGAAGAAAGCAGTGCAAATTCTGACTCTAAAGTGTTTACTGGGGGCAGAACTGGTTTGGAGGCAGCGGAAAAGCTATCAGAACAGATGCGGA AGGCGTTCAGAATAGAGGCAGTTGGATTAATGAGTCTGTGGTTTAACTTTGGAGCAGGTGCACTAGCTCGTTTTGTTGTTGAGTGGGAGTCAGGCAAAGA GGGATGTACGATGCATGTTTCTCCTGATAATCTGTGGCCTCATACTAAGTTCCTTGAAGGTTTTATTAATGGAGCTGAAGTGGGATCCCTTTTGGACTGC ATTCGACTCACTGCAGGACCTTTGCATGCGCTTGCAGCTGCAACTCGTCCTGCACGAGCTCAAGCTGGACCAGGGGTAACAGTCCCTGCTGTTTCTGCTC CAAAACAAGCTGGGTATGTGCAACCACAGGCTGTTATACCTAGCAGTTCAAGTAACAATTTTGTGCCAATATCTGGGTCCACAGGGACTCCAGCCCAACC TGTTAGTGCTGGTCCTCTTGGAAGTCATGCTCTCCAGAATGCTGCAATGTTAGCTGCTAGTCGTGGAGGCCCTGGCATTGTTCCTAGCTCTCTCTTGCCA ATTGATGTATCTGTTGTGCTACGTGGACCTTACTGGATCCGAATTATTTACCGCAAGAATTTCTCAGTTGACATGCGTTGCTTTGCTGGAGATCAAGTCT GGCTGCAGCCAGCAACGCCCCCTAAAGGAGGGCCATCAATTGGAGGGTCTTTACCATGTCCACAGTTCCGTCCTTTTATTATGGAGCATGTTGCGCAGGA GCTGAATGGATTGGATCCAGGTTTCGCTGGTGGTCAACAGACAGCTGGACTGTCAAGTCCTAGCATCCAACTTCCGGTTTCAGGTTCCCAACTTTCGAGT GTTAATGGAAATAGAGTTAGCCTTCCAAGTTCTGCAGCAATGTCCAGGGCGGCAAATCAAGTGGCAGCCCTGAACCGTGTTGCAAATGCTGTTCCAGGAT CGTCAAATTTAGCTGTTGTGAGCACTGGGTTGCCAATACGTAGATCTCCAGGTGCTGGTGTCCCGGCACATCTTAGAGGAGAGTTAAATACAGCTATTAT CGGTCTTGGTGATGATGGAGGTTATGGAGGAGGGTGGGTTCCTCTTGTTGCCCTAAAGAAGGTTCTAAGGGGTATTCTTAAATACCTAGGCGTGCTTTGG CTATTTGCTCAGTTACCTGATTTGTTAAAGGAGATCCTTGGATCAATTTTGAAAGACAATGAAGGTGCTTTATTGAATTTGGACCAGGAGCAACCTGCTT TGCGCTTCTTTGTCGGGGGGTATGTTTTTGCTGTAAGTGTGCACAGAGTTCAACTTCTTCTTCAGGTACTTAGTGTTAAGCGTTTTCATCATCAGCAGCA ACAGCAGCAACAGAACTCTGCCGCCTCTCAGGAAGAACTTACTCAATCAGAGATTGGGGAGATATATGACTATTTTAGTCGGCGTGTTGCATCTGAGCCC TATGATGCTTCTCGTGTTGCATCATTCATAACCCTTCTCACATTGCCTATATCAGTGTTGAGAGAATTTTTGAAGTTAATAGCGTGGAAGAAAGGACTGG TACAGGCCCAAGGTGGTGGAGAAATGGCTCCTGTACAGAAACCTCGTATTGAATTATCTCTTGAGAATCATAATGCAGCAGATGAGAAATCTGAAAATTC ATCTGTTGCCAGAAGCAATATCCACTACGATAGACCTCATAATTCTGTGGACTTTGCGTTGACTGTGGTACTTGATCCAGCACACATACCTCACATTAAT TCAGCTGGGGGTGCAGCTTGGCTGCCCTACTGTGTTTCGGTGAGGTTGCGATACTCATTTGTGGACAATCTGAACGTGTCTTTCCTGGGAATGGAAGGAA GCCATGGAGGACGGGCTTGCTGGTTGCGAGCTGATGATTGGGAGAAATGCAAGCAGCGAGTAGCCAGAACCGTGGAAGTTAGTGGCAGTTCGGCAGGAGA TCGTGACCTTAGTCAAGGAAGGTTGAGAATAGTAGCAGATAACGTGCAAAGAGCATTGCATTTGTGCCTGCAGGGTCTGAGAGATGGCAATGGAGTAACT TCAAGCGGTGGCCCAACTTGA
AA sequence Show only first row Show all	>Lus10006586 pacid=23162683 polypeptide=Lus10006586 locus=Lus10006586.g ID=Lus10006586.BGIv1.0 annot-version=v1.0 MAELGQQTVDFSTLVSRAAEDSFLSFKDLVEKSRTADESDSERKIGLLKYLVKTRQRMLRLNVLAKWCQQVPLIQYCQQLQSTVASHDTCFTQAADSLFF MHEGLQQARAPIYDVPSAVEVLLTGSYQRLPKCVEDIGLQGTLGGDQQKPALRKLDTLVRTKLLEASLPKEFSEVKVSDGTAMLRVDGEFKVLVTLGYRG HLSLWRILHLELVVGEKSGSVKMEELRRYALGDDLERRMAAAENPFVILYSVLHELCVSLVMDTVIRQVQALRLGRWRGAIRFEIISDGGTFSQLNQDGE ADSAGMRIPGLKIMYWLDLDKNSGALDSGASHVLKIEPGADLQIRCTHGTFVIDPSTGREAEFSIDQRCIDVENLLMRAICFNRYTRLLEIQKELGKNIQ ISRAAGDVALQPHMDEPAFYHIKKLSLSEGRTYEAQEVLCVRAYGSSFFMLGINIRTGRFLIRSTQNVLPPTVLSECEEALNHGSITAAEVFTSLRNKSI LHLFASIGRFLGLEVYEHGSDAVKVPKSVLNGSPMLLMGFPDCGSSYFLLVHLDKDFKSQFALLETQPDPSERVYAGDVNQVVRVKKIDTGRMQMLEDEL NLSLLNLEKLSSLLPKAGGGPLQTSEHGLTDFSLEGPLQIAGDAPSSFSSIVDEVFELEKGASVPAMGVENLPSSINLLSNYGSVPTIMHGVKVGSLPKW EGQMNNMNALKNSSLGSHYNGSFYQSNNLKGHSSSFGSLSPAIGRNSNVKKLSGSKSDQDLASLRSPNSVEVTSNVSMDEDHLRLLNNSVVDGLSGRSAR LLSPPQTSGSQVSPASVKSNGLRSILPGLSAGTTRVNGPGSLATTPVSQEKGDGSIDDMSKHEKSLRKRTISDVLSLVPSLQDIDARAGLFKKRKTFELS QSQQLLSKTLTSSETVNKSEELNYGDLLAEANIGNIPSSIYISSLLHVIRHCSLCIKYARLTSQMEALDIPYVEEVGLRSGSSNIWFRLPFARGDPWQHI CLRLGRPGSMYWDVKINDQHFRDLWELQKGCSSTPWGSGVRIANSSDVDSHIRYDSEGVVLSYQSVESNSIKKLVSDILRLSNARTFSLGMWKILGVRED EILEESSANSDSKVFTGGRTGLEAAEKLSEQMRKAFRIEAVGLMSLWFNFGAGALARFVVEWESGKEGCTMHVSPDNLWPHTKFLEGFINGAEVGSLLDC IRLTAGPLHALAAATRPARAQAGPGVTVPAVSAPKQAGYVQPQAVIPSSSSNNFVPISGSTGTPAQPVSAGPLGSHALQNAAMLAASRGGPGIVPSSLLP IDVSVVLRGPYWIRIIYRKNFSVDMRCFAGDQVWLQPATPPKGGPSIGGSLPCPQFRPFIMEHVAQELNGLDPGFAGGQQTAGLSSPSIQLPVSGSQLSS VNGNRVSLPSSAAMSRAANQVAALNRVANAVPGSSNLAVVSTGLPIRRSPGAGVPAHLRGELNTAIIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLW LFAQLPDLLKEILGSILKDNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQQNSAASQEELTQSEIGEIYDYFSRRVASEP YDASRVASFITLLTLPISVLREFLKLIAWKKGLVQAQGGGEMAPVQKPRIELSLENHNAADEKSENSSVARSNIHYDRPHNSVDFALTVVLDPAHIPHIN SAGGAAWLPYCVSVRLRYSFVDNLNVSFLGMEGSHGGRACWLRADDWEKCKQRVARTVEVSGSSAGDRDLSQGRLRIVADNVQRALHLCLQGLRDGNGVT SSGGPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10006586 [exp]	0	1
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	1.7	0.9479
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002909 [exp]	3.7	0.9316
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10040367 [exp]	3.9	0.9357
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10006110 [exp]	6.2	0.9185
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	8.0	0.9462
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	9.5	0.9325
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	11.1	0.9066
AT3G61690			nucleotidyltransferases (.1)		Lus10030266 [exp]	11.5	0.9373
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10014778 [exp]	11.6	0.9374
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	12.8	0.9287

Compare expression of checked genes

Lus10006586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.