Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03040 202 / 3e-62 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G02590 199 / 9e-62 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G24260 149 / 2e-41 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 146 / 1e-40 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 140 / 9e-39 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT2G18300 69 / 1e-12 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G36540 67 / 4e-12 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2) AT3G07340 67 / 5e-12 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 67 / 5e-12 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 67 / 9e-12 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015909 [exp] 236 / 2e-74 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014726 [exp] 206 / 4e-65 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 206 / 7e-64 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 204 / 4e-63 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018761 [exp] 189 / 8e-57 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 146 / 3e-40 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10036286 [exp] 120 / 7e-31 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10026008 [exp] 71 / 3e-13 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014300 [exp] 70 / 4e-13 AT2G18300 171 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G053500 [exp] 231 / 3e-73 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G041000 [exp] 213 / 5e-66 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G217800 [exp] 206 / 1e-63 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G045400 [exp] 204 / 4e-63 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.018G109500 [exp] 146 / 2e-39 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 146 / 2e-39 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 122 / 6e-31 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.005G121850 [exp] 71 / 4e-13 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.007G023600 [exp] 70 / 6e-13 AT2G18300 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G117300 [exp] 68 / 3e-12 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006587 pacid=23162685 polypeptide=Lus10006587 locus=Lus10006587.g ID=Lus10006587.BGIv1.0 annot-version=v1.0 ATGGCGGGAAATCCTACACCGGATGGTTTAGGAGACGATTTCCTTGAGCAGATCTTAGCGGCTCAACCGGGCTATGGCGGCGGCGGCGGCGGTGGTGGCG GAGGAGGAGGAGGAGGGGAAGGGATGATGATGATGGGTTTACAGCTAGGCTCTGGCGGCGGTGGTGGAGGGATGAGAGGTTTGAACAGCAATAACAACAA CAATAATAATAACAATAACATGGGAGGAAGGATGCCTTTGGGGTTGAACTTGGAACACCATGGATTCATGAGACACCCGCCGGAAGATCAATCGGGCGGA GGTGGTGTTGGCGGTTTGGATTCCGGCAACCTTAATAATAATAATGCTCCTTCTTCCTCTGCCACTTCTGGGATGAGTGAGAGGGATTCTGTGCACATGA CAGGTTTATTCCCAGCATTTGGACAGTTGCAAAGTCAGTCAATTAGGGCTCCTCCACCACAACTCCACCACCACCATCACCACCACCAGCATTTTGGTTT TGGGCCTGAGGGTGTCCTCCTGGGTTTTGGTCAGATGTATGGAGAAATTCAGTTCTTATGGGCACACCAGAATTTGTCATTACTGCTGAGTACACCTACT ACTGACAATCAATTTCAAAGCCAGCCAACACCAGGACCAGGACAGCTCCCTGCTGGATTGCAGCCACCTTCCATCCGCCCACGAGTTCGAGCTAGACGAG GCCAGGCTACTGACCCTCACAGCATCGCTGAGCGGTTACGCAGGGAAAGGATTGCTGAGAGAATGAAGGCTTTGCAGGAACTGGTTCCTACTGTCAACAA GACAGATAGGGCTGCAATGCTTGATGAGATTGTGGATTATGTCAAGTTTCTAAGGCTCCAAGTCAAGGTGCTTAGTATGAGTCGACTGGGGGCGGCAGGT GCAGTGGCTCAGCTTGTAGCTGATGTGCCGGTATCATCAGTTGAGGGAGAAGGAGGAGGTGGGGAAGAACAAGCTTGGGAGAAATGGTCAAATGATGGAA CTGAGCAACAAGTAGCAAAGTTGATGGAAGAAGACGTTGGAGGTGCAATGCAGTTCCTTCAGTCAAAGGCACTCTGCATCATGCCAATCTCACTTGCTTC TGCCATCTTCAGGTCACATCCTCCGCCTCCCGACCCATCATCAACCCTCATCAAGCCTGAATCAAACCCCCATTCATGA
AA sequence Show only first row Show all	>Lus10006587 pacid=23162685 polypeptide=Lus10006587 locus=Lus10006587.g ID=Lus10006587.BGIv1.0 annot-version=v1.0 MAGNPTPDGLGDDFLEQILAAQPGYGGGGGGGGGGGGGGEGMMMMGLQLGSGGGGGGMRGLNSNNNNNNNNNNMGGRMPLGLNLEHHGFMRHPPEDQSGG GGVGGLDSGNLNNNNAPSSSATSGMSERDSVHMTGLFPAFGQLQSQSIRAPPPQLHHHHHHHQHFGFGPEGVLLGFGQMYGEIQFLWAHQNLSLLLSTPT TDNQFQSQPTPGPGQLPAGLQPPSIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPTVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGAAG AVAQLVADVPVSSVEGEGGGGEEQAWEKWSNDGTEQQVAKLMEEDVGGAMQFLQSKALCIMPISLASAIFRSHPPPPDPSSTLIKPESNPHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10006587 [exp]	0	1
AT5G42670			Agenet domain-containing prote...		Lus10011444 [exp]	7.2	0.7735
AT5G20610			unknown protein		Lus10021568 [exp]	11.5	0.7512
AT5G15080			Protein kinase superfamily pro...		Lus10030668 [exp]	14.0	0.8012
AT5G43060			Granulin repeat cysteine prote...		Lus10019827 [exp]	20.6	0.7918
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10025262 [exp]	21.3	0.8029
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	25.5	0.7739
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Lus10020459 [exp]	29.1	0.8012
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10019828 [exp]	32.5	0.7698
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10037495 [exp]	39.1	0.7337
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013940 [exp]	44.2	0.7831

Compare expression of checked genes

Lus10006587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.