Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28750 103 / 1e-28 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) AT5G52440 58 / 1e-10 HCF106 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015910 [exp] 143 / 8e-44 AT5G28750 103 / 2e-28 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Lus10039254 [exp] 55 / 2e-09 AT5G52440 174 / 5e-53 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Lus10027499 [exp] 55 / 3e-09 AT4G14147 254 / 2e-81 protein binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G040900 [exp] 130 / 3e-39 AT5G28750 97 / 5e-26 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.005G053400 [exp] 116 / 6e-34 AT5G28750 117 / 3e-34 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.015G147100 [exp] 56 / 6e-10 AT5G52440 209 / 2e-67 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.012G144300 [exp] 54 / 3e-09 AT5G52440 216 / 5e-70 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02416 [flax] [poplar] TatA_B_E mttA/Hcf106 family
Representative CDS sequence Show only first row Show all	>Lus10006588 pacid=23162688 polypeptide=Lus10006588 locus=Lus10006588.g ID=Lus10006588.BGIv1.0 annot-version=v1.0 ATGGAGATTTCTTCCACAACCCTGTCCGTTTCTAGTCTCTCGCCGGCTGGTTTTCGACTTTCTTCATCCAGCTCCGCCTCATTCAACACCATATCTCTCT TCAACAAGTCGAAGAAATGCGATTCTCTGGCCATGGCAGGAGGAAGACCCAGAATCCACAGAGCCAAAAAGGGCATGACTTGCAATGCTTTGTTTGGCTT GGGCGTCCCTGAGCTCGTCGTGATTGCTGGAGTGGCCGCTCTAGTTTTCGGGCCCAAGAAGCTTCCGGAAGTTGGCAAGAGTATTGGTAAAACTGTAAAG AGCTTCCAGCAGGCTGCAAAAGAGTTTGAGAGTGAGCTGAAGAAGGAACCTGAAAGCCTGGAGGAGACCCCTGCAGAGAAAGCAGCTGTTGTAATGAGTG AGGAGAATAAGAAGCAGCAACAGCAGCAAGATCTTGAAGTATCAAACTCAAAAGAGAGTGTATGA
AA sequence Show only first row Show all	>Lus10006588 pacid=23162688 polypeptide=Lus10006588 locus=Lus10006588.g ID=Lus10006588.BGIv1.0 annot-version=v1.0 MEISSTTLSVSSLSPAGFRLSSSSSASFNTISLFNKSKKCDSLAMAGGRPRIHRAKKGMTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVK SFQQAAKEFESELKKEPESLEETPAEKAAVVMSEENKKQQQQQDLEVSNSKESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28750			Bacterial sec-independent tran...		Lus10006588 [exp]	0	1
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10040068 [exp]	3.5	0.8689
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10021367 [exp]	4.2	0.8721
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10010846 [exp]	5.4	0.8803
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10012054 [exp]	5.7	0.8466
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Lus10006118 [exp]	7.7	0.8414
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	15.5	0.8770
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Lus10010292 [exp]	15.5	0.8125
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	17.4	0.8365
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	23.3	0.8656
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	24.7	0.8238

Compare expression of checked genes

Lus10006588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.