Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18970 140 / 4e-37 MEF20 mitochondrial editing factor 20 (.1) AT5G66520 129 / 1e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 128 / 4e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 124 / 4e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 125 / 6e-31 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 122 / 3e-30 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G43790 118 / 3e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G47530 118 / 7e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74400 116 / 2e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37570 116 / 3e-28 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015912 [exp] 249 / 2e-78 AT3G18970 431 / 3e-148 mitochondrial editing factor 20 (.1) Lus10010271 [exp] 143 / 8e-42 ND / Lus10017734 [exp] 129 / 2e-36 ND / Lus10014482 [exp] 121 / 5e-34 ND 38 / 3e-04 Lus10014486 [exp] 125 / 2e-32 ND / Lus10002024 [exp] 125 / 2e-31 AT5G56310 344 / 6e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 124 / 1e-30 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023251 [exp] 123 / 1e-30 AT1G50270 525 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 123 / 3e-30 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G075200 [exp] 133 / 6e-34 AT1G77010 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G035900 [exp] 129 / 2e-32 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 124 / 3e-31 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G034900 [exp] 124 / 4e-31 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G103600 [exp] 124 / 1e-30 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 124 / 1e-30 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G164100 [exp] 122 / 1e-30 AT1G77170 553 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G207500 [exp] 122 / 3e-30 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.008G106500 [exp] 121 / 5e-30 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 120 / 1e-29 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03004 [flax] [poplar] Transposase_24 Plant transposase (Ptta/En/Spm family) CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006589 pacid=23162689 polypeptide=Lus10006589 locus=Lus10006589.g ID=Lus10006589.BGIv1.0 annot-version=v1.0 ATGATGAGTTCTAGGATACCGTTTGATTGCGGTACAGAGGCAGCAAGGCACAAGAAAGAGCTGCTTCATAAATTGCAAAAACGGTTCATCGTGATTTTCC CGATTGGTCAAGGGCCATTGATGGTAGATGTGATGGATGGAGGTCCCAGCTTGGGTGGTGCAAGTGGAGCTGGTGATGGGGGTGATGAAGAATGTCGTCC CAAGAATGAACAAAGGCAATTGTGGTATGTACACCTAGTTGATGCGAATGATGAAGATTTAGGGATCGAGGCTTGGAAGACAAAATATTGGGCAAAGTTA GGGCGTAACAAGAAGAAGATAATGATGGACGTTGACTCATTTGGGCTTCCATCCAGGGAGAGTGGCAGATACTTACACCAGTTCCTTTGGAAGTGTGCAA AATTGGGAGGATACCTACCAATCAGAGTCAAGAATTGGCTTGCCATAGATTCAGAGAACAAGGGATCACTTTGGGATGAGTTGATTGCGCCAAGGTTCAC TTGGGACGAAGTCCATGATCAAACAATGCAGCGTTTCATCATGCTAGACCCGACTAAGAAAAAAGTTCGGCCACTAACAAAGAGAACAAAGCTACTAGCT CAAGTTGTGTACCATACTTTTGGTTCAAAGCCATTCAATAAAAAGAAGAAAGAAATGGAGAAGGCACAAGTTGGTCTAGTAGGCAGGGGAGATCTATTTC TCGCCACTCACATGAAGGTTGATGGGAAGTCCTATTCGACGACTGCAATAGAAAAAATGTCTATGGCAAGGGGTCTGGCCATTCGTGGGAAAGGGAACGA AGCGATGGAAGTTTTCGACGCAATTGCTGGTTCTGGTGTTAAACCCAATTTGGTAACTTTCACAAGCTTGCTTTCAGCTTGTTGTCATGCAGGTCTCGTG GAGGAAGGGCTTCGGTTGTTCGAAATCATGCAATTCAAATTCCATCTCGAGCCTGCAGTACAGCACTATGGCTGCATTGTCGATCTTCTTGGCAACCTAA GAGAAGCATACAGGTTCATAAAGGGGATGCCAGTACCGGCAGATGGGGTCTGGTGGCAGAGTCTGCTGAGCGCAAGTATAGTCCATGGAGATGTTGAATT AGGGGAGGAAATAGGGAAAATACTCCTCCAATTGCGTCCAGAAACAAGGAATTCAAGTGTTGACTATGTGGCTGTCTAA
AA sequence Show only first row Show all	>Lus10006589 pacid=23162689 polypeptide=Lus10006589 locus=Lus10006589.g ID=Lus10006589.BGIv1.0 annot-version=v1.0 MMSSRIPFDCGTEAARHKKELLHKLQKRFIVIFPIGQGPLMVDVMDGGPSLGGASGAGDGGDEECRPKNEQRQLWYVHLVDANDEDLGIEAWKTKYWAKL GRNKKKIMMDVDSFGLPSRESGRYLHQFLWKCAKLGGYLPIRVKNWLAIDSENKGSLWDELIAPRFTWDEVHDQTMQRFIMLDPTKKKVRPLTKRTKLLA QVVYHTFGSKPFNKKKKEMEKAQVGLVGRGDLFLATHMKVDGKSYSTTAIEKMSMARGLAIRGKGNEAMEVFDAIAGSGVKPNLVTFTSLLSACCHAGLV EEGLRLFEIMQFKFHLEPAVQHYGCIVDLLGNLREAYRFIKGMPVPADGVWWQSLLSASIVHGDVELGEEIGKILLQLRPETRNSSVDYVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10006589 [exp]	0	1
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10031675 [exp]	1.4	0.8915
AT3G29000			Calcium-binding EF-hand family...		Lus10026974 [exp]	2.8	0.8872
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	6.2	0.8819
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034666 [exp]	6.6	0.8661
AT3G56380		ARR17	response regulator 17 (.1)		Lus10029027 [exp]	7.1	0.8075
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	9.7	0.8610
AT5G42785			unknown protein		Lus10001961 [exp]	22.8	0.8240
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10039213 [exp]	23.7	0.8004
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10031674 [exp]	26.9	0.8046
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	26.9	0.8600

Compare expression of checked genes

Lus10006589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.