Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28770 241 / 7e-77 bZIP BZO2H3, ATBZIP63 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) AT3G54620 157 / 7e-44 bZIP BZO2H4, ATBZIP25 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) AT4G02640 144 / 7e-39 bZIP BZO2H1, AT4G02640, ATBZIP10 Arabidopsis thaliana basic leucine zipper 10, bZIP transcription factor family protein (.1.2) AT5G24800 96 / 4e-22 bZIP BZO2H2, ATBZIP9 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) AT3G30530 45 / 3e-05 bZIP ATBZIP42 basic leucine-zipper 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015913 [exp] 587 / 0 AT5G28770 244 / 7e-78 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10018759 [exp] 173 / 3e-49 AT3G54620 182 / 1e-52 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Lus10024847 [exp] 155 / 1e-42 AT3G54620 171 / 2e-48 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Lus10024848 [exp] 155 / 3e-41 AT4G02610 421 / 3e-144 Aldolase-type TIM barrel family protein (.1) Lus10026973 [exp] 92 / 2e-20 AT5G24800 191 / 6e-59 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) Lus10020170 [exp] 74 / 1e-14 AT5G24800 148 / 3e-43 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) Lus10013059 [exp] 43 / 0.0002 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10029101 [exp] 43 / 0.0002 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10017656 [exp] 42 / 0.0008 AT2G42380 305 / 1e-103 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G040700 [exp] 378 / 1e-128 AT5G28770 234 / 9e-74 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.005G053200 [exp] 360 / 9e-122 AT5G28770 223 / 1e-69 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.005G217500 [exp] 172 / 8e-49 AT3G54620 160 / 2e-44 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.002G045800 [exp] 141 / 4e-37 AT3G54620 123 / 1e-30 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.006G277800 [exp] 91 / 2e-20 AT5G24800 222 / 2e-71 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) Potri.007G019900 [exp] 49 / 1e-06 AT1G75390 130 / 5e-39 basic leucine-zipper 44 (.1.2) Potri.007G006900 [exp] 46 / 2e-05 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.004G158200 [exp] 44 / 5e-05 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.014G007100 [exp] 44 / 6e-05 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1) Potri.013G124400 [exp] 44 / 0.0001 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12498 [flax] [poplar] bZIP_C Basic leucine-zipper C terminal CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10006590 pacid=23162693 polypeptide=Lus10006590 locus=Lus10006590.g ID=Lus10006590.BGIv1.0 annot-version=v1.0 ATGGATAGGGTATTCTCAGTGGACGGAATGTCCGACCAATTTTGGTCTCCGCCGTCTCCACCTCCGCCAAATCACCAACACCACAGTCATCTGCCAGCTC CTTCTCCCCCACTGACTGTCGACGGATCTTCGAAGATGAACCGGAGCGCTTCCGAATGGGCTTTCCAACGCTTTCTACAAGAAGCTTCCTCCGCCGCCGC ATCCGACTCTGAACGAAGCGACGTCGTCCACATCAAGAATCAACGAGGAAACTCCTCCTCCTCCTCCTCCTCCAGCGTTAACGCAGCCAATGGTGCAGCT TCCGCCGCCGCCCCTCCTGAAATTCCGGTTGATTCGGAGGAGTACCACGCGTTTCTCAAGAGTAAACTCAACTTGGCCTGTGCTGCCGTTGCCTTGTCAC GGGGATCCTATCTTAAACCTCAAGACTCCTCTGGCAGAGCTGACAGTGGGTCACAAGCTTCAAACACTTCACAAGTGGGATCAAATGCTCCTTCTAAAGG TGGAAATGATTTGTCCTGGTCAATTAGCAAGGACAGTGATGATCCAGTTGAAATCCCTTCTTTACCTACCGCACTGAAAAGGTCTGCAGTTCTTATGAAG TCAACAACCAGCGGGTCCTCAAGAGATCAATCAGAAGATGACGAAAATGAAGAGGAATTTGCAACTGCTGATAATACCAATCCAGCTGATGTGAAACGTG TAAGGAGGATGCTTTCTAATAGGGAGTCTGCAAGACGATCCAGACGAAGAAAACAGGCACATTTGACTGAACTTGAGACACAGGTTTCTCAGCTAAGAGT TGAGAATTCATCTCTGTTAAAACGACTCAGTGACATAAGCCACAGGTACAATCAGTCTTCTGTTGACAATAGGGTCCTAAAAGCTGATGTTGAGACATTA AGAACAAAGGTGAAGATGGCTGAGGAGACTGTGAAAAGGGTTACAGGAGTGTCAACCATCTTCCAAGTGAGTTCTGATACTTCAGCAGATGCTGCTGTTC CTGCCTCCCAGCATCACACTCATCACTCTCCAACCAAACCATCCTCCAACACTGAATCCAGAGGCAACAATTGTATGTCAGATGTCTCGACTGTTGAAAA TGGACAGTCAGACGACGGAGCTGGAGGACCAGCAGTAACAATAGGTAATAAGATTGGCCGAAAAGCTTCGCTGCGTCGAATAGCTAGCTTGGAGCACTTG CAGAAAAGGATCCGGGGTGGAGCAAGTTCCAATGGGGAGCAGTAG
AA sequence Show only first row Show all	>Lus10006590 pacid=23162693 polypeptide=Lus10006590 locus=Lus10006590.g ID=Lus10006590.BGIv1.0 annot-version=v1.0 MDRVFSVDGMSDQFWSPPSPPPPNHQHHSHLPAPSPPLTVDGSSKMNRSASEWAFQRFLQEASSAAASDSERSDVVHIKNQRGNSSSSSSSSVNAANGAA SAAAPPEIPVDSEEYHAFLKSKLNLACAAVALSRGSYLKPQDSSGRADSGSQASNTSQVGSNAPSKGGNDLSWSISKDSDDPVEIPSLPTALKRSAVLMK STTSGSSRDQSEDDENEEEFATADNTNPADVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLSDISHRYNQSSVDNRVLKADVETL RTKVKMAEETVKRVTGVSTIFQVSSDTSADAAVPASQHHTHHSPTKPSSNTESRGNNCMSDVSTVENGQSDDGAGGPAVTIGNKIGRKASLRRIASLEHL QKRIRGGASSNGEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	0	1
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	1.0	0.9676
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021545 [exp]	2.0	0.8962
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10041045 [exp]	2.4	0.8533
AT5G10200			ARM-repeat/Tetratricopeptide r...		Lus10029573 [exp]	2.8	0.8609
AT1G56220			Dormancy/auxin associated fami...		Lus10031488 [exp]	5.3	0.8439
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	6.0	0.8701
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10034484 [exp]	6.3	0.8564
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028590 [exp]	8.8	0.8396
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	12.0	0.8317
AT1G16560			Per1-like family protein (.1.2...		Lus10038885 [exp]	12.2	0.8407

Compare expression of checked genes

Lus10006590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.