Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00680 352 / 1e-121 ATCG00680.1, PSBB photosystem II reaction center protein B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001686 [exp] 117 / 7e-35 ATCG00680 117 / 4e-33 photosystem II reaction center protein B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G113575 [exp] 349 / 4e-120 ATCG00680 933 / 0.0 photosystem II reaction center protein B (.1) Potri.011G074868 [exp] 341 / 4e-117 ATCG00680 926 / 0.0 photosystem II reaction center protein B (.1) Potri.017G140700 [exp] 282 / 2e-95 ATCG00680 634 / 0.0 photosystem II reaction center protein B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00421 [flax] [poplar] PSII Photosystem II protein
Representative CDS sequence Show only first row Show all	>Lus10006593 pacid=23162686 polypeptide=Lus10006593 locus=Lus10006593.g ID=Lus10006593.BGIv1.0 annot-version=v1.0 ATGGACAATGGGGACGGAATAGCGGTTGGGTGGTTAGGACATCCCATCTTTAGAGATAAAGATGGACGTGAACTTTTTGTCCGCCGTATGCCTACTTTTT TTGAAACATTTCCCGTTGTTTTGGTAGATGGAGACGGAATTGTTAGAGCGGATGTTCCTTTTCGAAGAGCCGAATCAAAGTATAGTGTTGAACAAGTAGG GGTAACGGTTGAGTTTTATGGTGGCGAACTAAATGGAGTCAGTTATAGTGATCCTACTGCTGTGAAAAAATATGCTAGACGCGCTCAATTGGGTGAAATT TTTGAATTAGATCGTGCTACTTTGAAATCCGATGGTGTTTTTCGTAGTAGTCCAAGGGGCTGGTTTACTTTTGGACATGCTTCGTTTGCTCTGCTTTTTT TCTTCGGACACATTTGGCATGGCGCTAGAACCTTGTTCAGAGATGTTTTTGCTGGTATTGATCCAGATTTAGATGCTCAAGTGGAATTTGGAGCATTCCA AAAACTGGGAGATCCAACTACAAGAAGACAAGTAGTTTGA
AA sequence Show only first row Show all	>Lus10006593 pacid=23162686 polypeptide=Lus10006593 locus=Lus10006593.g ID=Lus10006593.BGIv1.0 annot-version=v1.0 MDNGDGIAVGWLGHPIFRDKDGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPTAVKKYARRAQLGEI FELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTRRQVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006593 [exp]	0	1
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	1.0	0.9970
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	1.4	0.9955
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Lus10032825 [exp]	3.9	0.9627
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032827 [exp]	4.5	0.9624
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Lus10004894 [exp]	5.0	0.9612
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10009173 [exp]	5.5	0.9567
					Lus10028567 [exp]	5.7	0.8961
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10007142 [exp]	6.2	0.8479
AT3G63380			ATPase E1-E2 type family prote...		Lus10004087 [exp]	6.3	0.8707
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032826 [exp]	6.5	0.9229

Compare expression of checked genes

Lus10006593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.