Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00670 140 / 2e-40 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT5G23140 106 / 7e-27 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G02560 104 / 1e-25 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT5G45390 96 / 1e-22 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G66670 96 / 2e-22 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT1G11750 87 / 1e-19 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) AT1G12410 86 / 3e-19 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT4G17040 73 / 2e-14 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G09130 69 / 3e-13 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040982 [exp] 108 / 3e-27 AT5G23140 338 / 5e-118 nuclear-encoded CLP protease P7 (.1) Lus10017397 [exp] 103 / 7e-26 AT5G23140 394 / 1e-140 nuclear-encoded CLP protease P7 (.1) Lus10010196 [exp] 102 / 1e-25 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1) Lus10013434 [exp] 101 / 2e-24 AT5G23140 347 / 3e-121 nuclear-encoded CLP protease P7 (.1) Lus10040981 [exp] 100 / 2e-24 AT5G23140 350 / 1e-122 nuclear-encoded CLP protease P7 (.1) Lus10010003 [exp] 100 / 5e-24 AT1G02560 308 / 2e-105 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10002422 [exp] 100 / 6e-24 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10025022 [exp] 99 / 9e-24 AT1G02560 313 / 3e-107 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10001450 [exp] 99 / 4e-23 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071700 [exp] 109 / 9e-28 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.005G092600 [exp] 108 / 1e-27 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.002G195200 [exp] 102 / 5e-25 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.014G119700 [exp] 102 / 5e-25 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.004G092100 [exp] 102 / 1e-24 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.001G130601 [exp] 99 / 3e-24 AT5G45390 239 / 2e-79 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.003G103300 [exp] 99 / 1e-23 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.009G114001 [exp] 94 / 6e-22 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.004G152900 [exp] 92 / 2e-21 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.001G115900 [exp] 86 / 3e-19 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Lus10006595 pacid=23162694 polypeptide=Lus10006595 locus=Lus10006595.g ID=Lus10006595.BGIv1.0 annot-version=v1.0 ATGGCACGGCCACCAATAAAGTTGCCTGGTTGGGGAAACGAGAACTGGGACGAGAACGAGAACAGGGACGACAACGGGGACGAGAGCGGGGACGAGAGCG GGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGA CGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAG AGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCG GGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCGGGGACGAGAGCAGGGACGAGGACGAGAACGGGGACGACAACCAGAAGGGGAACGGGAAGGGGAA AGACAACAAGAGCAAGAAGGAAGATATCTGGTGGGATGATATATATGAGGGACTTGCTGAACAGAGAGTCGTGTTGCTCACCGAGGAGCTTGACAACGAG GTGACCAATGATATTGTTGGTTCGTTGCTCGACCTATCTTTCCAGAGTCCCGCTGATATTTATCTTTTTATAAATTGTCCTGGGGGTTCAGTAGCGAATG GACTATCGATTCTCGATACCATGGAAATGATCAAGCCGGATGTGCAGACCATCTGCATAGGAGATGCCTCTTCAATGGCATCTTTGATCCTGGCTGCGGG AGCAAAAGGAAAGCGTCGAGCATTCCCTCACGCTAGGATAATGGCGCATCAACCCTGGTCTAATAAATTGAAGGCCAAAACAGGAATTCTTGCGGTAGAA CATAACCACATGGACACCTTCCGCGACGATGTCACCAAGCTTTATGCGGCCAAAATGCACCGACAGCTGAGTGAAGCAGCAACGCTCTGA
AA sequence Show only first row Show all	>Lus10006595 pacid=23162694 polypeptide=Lus10006595 locus=Lus10006595.g ID=Lus10006595.BGIv1.0 annot-version=v1.0 MARPPIKLPGWGNENWDENENRDDNGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESGDE SGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESGDESRDEDENGDDNQKGNGKGKDNKSKKEDIWWDDIYEGLAEQRVVLLTEELDNE VTNDIVGSLLDLSFQSPADIYLFINCPGGSVANGLSILDTMEMIKPDVQTICIGDASSMASLILAAGAKGKRRAFPHARIMAHQPWSNKLKAKTGILAVE HNHMDTFRDDVTKLYAAKMHRQLSEAATL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG00670		PCLPP, ATCG0067...	CASEINOLYTIC PROTEASE P 1, pla...		Lus10006595 [exp]	0	1
ATCG00830		ATCG00830.1, RP...	ribosomal protein L2 (.1)		Lus10001687 [exp]	1.7	0.9612
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	2.4	0.9466
					Lus10026434 [exp]	3.5	0.9444
					Lus10002716 [exp]	4.0	0.9182
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	5.5	0.9116
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10004897 [exp]	5.9	0.9177
					Lus10007146 [exp]	6.7	0.8825
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	9.2	0.9082
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012980 [exp]	10.7	0.8781
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	13.0	0.8850

Compare expression of checked genes

Lus10006595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.