Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22680 153 / 8e-48 RDM1 RNA-DIRECTED DNA METHYLATION 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039354 [exp] 306 / 2e-107 AT3G22680 155 / 2e-48 RNA-DIRECTED DNA METHYLATION 1 (.1) Lus10011043 [exp] 78 / 2e-18 AT3G22680 80 / 3e-19 RNA-DIRECTED DNA METHYLATION 1 (.1) Lus10003012 [exp] 73 / 5e-17 AT3G22680 66 / 1e-14 RNA-DIRECTED DNA METHYLATION 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G155800 [exp] 178 / 1e-57 AT3G22680 187 / 3e-61 RNA-DIRECTED DNA METHYLATION 1 (.1) Potri.008G076500 [exp] 134 / 6e-40 AT3G22680 137 / 2e-41 RNA-DIRECTED DNA METHYLATION 1 (.1) Potri.010G083751 [exp] 57 / 3e-11 AT3G22680 54 / 6e-11 RNA-DIRECTED DNA METHYLATION 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09187 [flax] [poplar] RdDM_RDM1 RNA-directed DNA methylation 1
Representative CDS sequence Show only first row Show all	>Lus10006598 pacid=23145331 polypeptide=Lus10006598 locus=Lus10006598.g ID=Lus10006598.BGIv1.0 annot-version=v1.0 ATGAAGAGGCCGATTCCGTGGACTGATGAGGTGGATGTCATATCAGATGATTCTTCTTCAAGTTCTGATGCACAAAACAACCACGTCGCCGCCGATGGAG TTGACAGTAACCAGCAGCAGCAGCAGCATTTCCTCCCACATGAAATAGAATGGGACTCTCAAGAGATGATAACGAGGAATGCAGAAATGTATCAAGAATA CATGAACGAGCTAGCAATCCCATCTCTCCGGGGCTCAGTGATTCCGTGTTCCTCATGGATGGAATTAGGGAGATCCATGAAGCAACTCTATGGGCAGCCT TTCCATTACTTAACCAACCTCATTCTCAGACGCTGGGATGAGCTCAGAACCGGCACTGAACATCAACACCAGCCCTTGGACTTCATCATTCACCCAAGTA AAGCAGAGACCACCATCTGGCTTGTTGAAGAAATCCACCGCAAGACCACTTCCCCTCATCACCTTGCTAAACTCTGGCTTTCCGACCCCATGCACAAACG TTTTATGGACGCTCTTGTACCGCCCCTCTCCTCGCCCGATCCTTGA
AA sequence Show only first row Show all	>Lus10006598 pacid=23145331 polypeptide=Lus10006598 locus=Lus10006598.g ID=Lus10006598.BGIv1.0 annot-version=v1.0 MKRPIPWTDEVDVISDDSSSSSDAQNNHVAADGVDSNQQQQQHFLPHEIEWDSQEMITRNAEMYQEYMNELAIPSLRGSVIPCSSWMELGRSMKQLYGQP FHYLTNLILRRWDELRTGTEHQHQPLDFIIHPSKAETTIWLVEEIHRKTTSPHHLAKLWLSDPMHKRFMDALVPPLSSPDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10006598 [exp]	0	1
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	8.9	0.7315
AT4G40042			Microsomal signal peptidase 12...		Lus10006422 [exp]	15.0	0.7597
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	15.3	0.7606
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	15.7	0.7541
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	23.4	0.7560
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10037576 [exp]	25.0	0.7225
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10011348 [exp]	26.3	0.6060
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10007941 [exp]	28.5	0.7205
AT5G06790			unknown protein		Lus10023815 [exp]	29.3	0.7068
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10032839 [exp]	39.2	0.7207

Compare expression of checked genes

Lus10006598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.