Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22690 378 / 4e-125 unknown protein AT5G40405 273 / 5e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 267 / 4e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 263 / 5e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 260 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 260 / 8e-81 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 253 / 9e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G29760 256 / 1e-79 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 255 / 4e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 252 / 2e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029344 [exp] 266 / 5e-84 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000706 [exp] 270 / 7e-84 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10024876 [exp] 268 / 4e-83 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10040680 [exp] 265 / 1e-82 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 251 / 8e-78 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 249 / 3e-77 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 249 / 7e-77 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016387 [exp] 243 / 9e-77 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 245 / 4e-76 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083700 [exp] 441 / 1e-149 AT3G22690 1050 / 0.0 unknown protein Potri.018G071800 [exp] 286 / 4e-91 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 273 / 3e-88 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.007G050200 [exp] 271 / 3e-86 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 274 / 9e-86 AT3G22690 582 / 0.0 unknown protein Potri.003G031600 [exp] 268 / 7e-84 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 263 / 3e-83 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 261 / 2e-81 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 258 / 3e-81 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 259 / 7e-81 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006599 pacid=23145300 polypeptide=Lus10006599 locus=Lus10006599.g ID=Lus10006599.BGIv1.0 annot-version=v1.0 ATGGAAGTTGCTTCTGCATGTGGGTATCTTGGAGGTCTGGAACTTGCTAAATGGATCTATGTGTACATTCAGAAGAACAAGATTCAGTACGATACCCGGC TTGGCACAATCTTGATTGATATGTTTGCTAGGTGTGGTGATCCTCGTAGTGCAATGCAGGTCTTCAGTAAGATGGCAAAAAAAGATGTGTCAGCTTGGAC AGCAGCCATCAGAGCCATGGCCATGGAAGGGAATGGCGAACAAGCTATTGAGCTTTTCAATGAGATGATACGTGAAGGAATTAAACCTGACGAGGTCGTG TTCGTCAATTTACTGTCGGGACTGAGTCACAGTGGGTTAGTGGAAGAAGGCTGGCAGATTTTCAGGTTAATGGAGGACTCGTTTGGCTTAGAGCCCCAAG TGGTTCATTATGGTTGCATGGTTGATTTGCTTGGTCGAGCTGGGTTTATTGCAGAAGCAGTCAATCTTATCAAGGACATGCCAATGGAACCAAATGTGGT TGTTTGGAGTTCTCTTTTAGCTGCCTGCTGGATGCACAACAATATCAATATTGCCACATATGCAGCTGAAAGGATAACCGTACACGATCCTGGAAGACCT GGAGTCCATGTTCTTTTGTCTAATATCTACGCATCTGCTGGGCAATGGAATGATGTTACCAAAGTCAGGCTACAAATGAAAGAGCTAGGGGTCCAAAAAG ACCCCGGATCGAGCTCTATTCAGATCGATGGAGAAGTTTATGAGTTCACCTCTGGGACTGAATCTGTATTCCGCACGGAAAAGAACCAAACCGAACCAAT GTTGGAAGAGATGAGTTGCAGATTGACAGATGCTGGGTTTGTTTCGGATCTCGCAAACGTTCTGCTGGATGTGGATGAGGCAGAAAAACGGTACCTGCTC AGTAGACACAGTGAGAAGCAAGCTTTGGCTTTGCTCTCATCCGCACAAGCCCAACCATGCCAATACGAGTGA
AA sequence Show only first row Show all	>Lus10006599 pacid=23145300 polypeptide=Lus10006599 locus=Lus10006599.g ID=Lus10006599.BGIv1.0 annot-version=v1.0 MEVASACGYLGGLELAKWIYVYIQKNKIQYDTRLGTILIDMFARCGDPRSAMQVFSKMAKKDVSAWTAAIRAMAMEGNGEQAIELFNEMIREGIKPDEVV FVNLLSGLSHSGLVEEGWQIFRLMEDSFGLEPQVVHYGCMVDLLGRAGFIAEAVNLIKDMPMEPNVVVWSSLLAACWMHNNINIATYAAERITVHDPGRP GVHVLLSNIYASAGQWNDVTKVRLQMKELGVQKDPGSSSIQIDGEVYEFTSGTESVFRTEKNQTEPMLEEMSCRLTDAGFVSDLANVLLDVDEAEKRYLL SRHSEKQALALLSSAQAQPCQYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22690			unknown protein		Lus10006599 [exp]	0	1
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	28.7	0.6190
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10038246 [exp]	125.4	0.5628
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007202 [exp]	173.6	0.5120

Compare expression of checked genes

Lus10006599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.