Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22690 385 / 2e-127 unknown protein AT2G34400 196 / 2e-57 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G29760 189 / 4e-54 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 187 / 8e-54 MEF22 mitochondrial editing factor 22 (.1) AT3G08820 187 / 8e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 185 / 9e-53 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G50270 183 / 1e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G35130 184 / 5e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G04370 182 / 8e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 181 / 2e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039355 [exp] 649 / 0 AT3G22690 627 / 0.0 unknown protein Lus10010320 [exp] 211 / 4e-63 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 209 / 9e-62 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 203 / 2e-59 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 195 / 2e-56 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 192 / 5e-56 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038187 [exp] 187 / 1e-54 AT3G25060 630 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025915 [exp] 182 / 2e-52 AT3G25060 627 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018492 [exp] 182 / 2e-52 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083700 [exp] 447 / 7e-152 AT3G22690 1050 / 0.0 unknown protein Potri.012G108000 [exp] 229 / 7e-70 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G105700 [exp] 230 / 9e-70 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G245300 [exp] 229 / 3e-68 AT3G22690 570 / 0.0 unknown protein Potri.016G128900 [exp] 215 / 3e-64 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 206 / 1e-60 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G135600 [exp] 202 / 6e-60 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G103600 [exp] 202 / 2e-59 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 196 / 7e-57 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G220300 [exp] 195 / 2e-56 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006600 pacid=23145335 polypeptide=Lus10006600 locus=Lus10006600.g ID=Lus10006600.BGIv1.0 annot-version=v1.0 ATGGTGTGCTTTGGTGTTTCTCCGGATAACTTCACATTCCCATTTTTGCTGAGTGGGTGCGCAAAGACTCGAGCCTTCAGTGAGGGAATTCAGGCTCATG GAGCACTTGTCAAGATGGGTTTAACCACCGATGGGTTTATTCAGAATTCAATGATACACTTCAATGGTGAGTGCGGAGAGATTGAGTTCATGCGGAAGGT GTTCGATGAAATGACCGAGAGAAACATCGTGACCTGGACCAGCTTAATTGGTTGTTATGTTAAGAGGGATTTGCCTGGAGTGGCGGTCGATTTGTTTCTT GAGATGGTAGACATGGGTATCAGGCTGAACCCCATTTCTCTTGTTTGTGCTATATCTGCTTGTGCCAAGTTGCAGGATCTTGAGTTGGGCAAGAAGGTAC GTGGTTACATCTTAGAGTTCGAGTTGAAGGTCAATACAGTAATGACTACTGCACTTGTTGATATGTATATGAAGTGCGGAGATGTAGATTCGGCTAGGGA GATTTTTTATGAATGTACTGATAAGAATCTGGTCTTGTGCAGCACCTTGATGTCAAATTATGTCCGCCATGGAATGCCACGTGAAGGTTTCGCCGTGTTA GATCAGATGATGCAAGATGGTCCTCGACCGGACATCGTTACAATGTTATCAGCAGTTTCAGCTTGTTCAAAAATAGAAGATCTTCAGCGGGGAAGATGTT TCCATGGTTTTATATTGAGGAATGCCTTCCACCAGTGGGATAATATATGTAATGCTCTGATAGACATGTACATGAAGTGTGGTAAACCTGAAGCAGCTTG TGCACTCTTTCATCACATGCCCAACAAGCCCTTTGTGTTGTGGAACTCACTCATCTCTGGTTCCGTAAGATGTGGAGATGTAGAATCAGCTTGGCAGCTA TTCCAGGAGATGCCAGAGAGTGATATTGTATCTTGGAATACTATGGTTGGAGCTTTGATCCAAGAGAGCATGTTTGTGGAAGCAATTCAGCTATTTAATG CAGAACCAAGGCGTGGACGTGGATAG
AA sequence Show only first row Show all	>Lus10006600 pacid=23145335 polypeptide=Lus10006600 locus=Lus10006600.g ID=Lus10006600.BGIv1.0 annot-version=v1.0 MVCFGVSPDNFTFPFLLSGCAKTRAFSEGIQAHGALVKMGLTTDGFIQNSMIHFNGECGEIEFMRKVFDEMTERNIVTWTSLIGCYVKRDLPGVAVDLFL EMVDMGIRLNPISLVCAISACAKLQDLELGKKVRGYILEFELKVNTVMTTALVDMYMKCGDVDSAREIFYECTDKNLVLCSTLMSNYVRHGMPREGFAVL DQMMQDGPRPDIVTMLSAVSACSKIEDLQRGRCFHGFILRNAFHQWDNICNALIDMYMKCGKPEAACALFHHMPNKPFVLWNSLISGSVRCGDVESAWQL FQEMPESDIVSWNTMVGALIQESMFVEAIQLFNAEPRRGRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22690			unknown protein		Lus10006600 [exp]	0	1
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10036839 [exp]	12.5	0.8476
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040049 [exp]	16.2	0.8503
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	26.1	0.8429
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10009626 [exp]	27.0	0.8417
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10023710 [exp]	28.8	0.8267
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10021232 [exp]	32.4	0.8333
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	34.9	0.8118
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	36.8	0.8118
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10021250 [exp]	44.0	0.8187
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10030522 [exp]	60.6	0.8150

Compare expression of checked genes

Lus10006600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.