Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22740 428 / 3e-151 HMT3 homocysteine S-methyltransferase 3 (.1) AT3G63250 392 / 3e-137 HMT-2, ATHMT-2 ,HMT2 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) AT3G25900 308 / 2e-104 HMT-1, ATHMT-1 Homocysteine S-methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039356 [exp] 593 / 0 AT3G22740 505 / 0.0 homocysteine S-methyltransferase 3 (.1) Lus10014686 [exp] 399 / 4e-140 AT3G63250 507 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10006901 [exp] 326 / 9e-112 AT3G63250 429 / 8e-153 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10041451 [exp] 306 / 4e-103 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3) Lus10034320 [exp] 303 / 2e-102 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083600 [exp] 473 / 5e-169 AT3G22740 512 / 0.0 homocysteine S-methyltransferase 3 (.1) Potri.008G155900 [exp] 444 / 6e-158 AT3G22740 485 / 2e-173 homocysteine S-methyltransferase 3 (.1) Potri.005G213100 [exp] 421 / 8e-149 AT3G63250 532 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.002G049800 [exp] 419 / 7e-148 AT3G63250 512 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.010G125200 [exp] 300 / 3e-101 AT3G25900 529 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02574 [flax] [poplar] S-methyl_trans Homocysteine S-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10006602 pacid=23145307 polypeptide=Lus10006602 locus=Lus10006602.g ID=Lus10006602.BGIv1.0 annot-version=v1.0 ATGGGTCAGGTAAATGGAGAAACTCCGTCAACGCTCCTAAGCGATTTCCTCCACCAGTGCGGTGGCAGCGCCGTCGTCGACGGAGGTTTCGCCACTGAAC TCGAACGTTACGGCGCCGACCTCAACGACCCGCTCTGGAGTGCTAAGTGCCTCGTCAGCTCTCCTCAGCTTGTCAGAAGGGTGCACTTGGATTATCTTGA TGCTGGTGCTAATATTATCCTGACAGCATCTTATCAGGCTACTATCCAAGGGTTTGAATCCAAAGGACTTCCCAAGGAGGAAGCTGAGCACTTGCTAACA CGAAGTGTGGAAATTGCTTGCGAGGCTAGGGAGATTTATGCTGATAAAGCTAGTCAGAGCTCTTGGGATTTAGTAGCAAATGGGCAAATCTCTAGGCACC CTGTTCTTGTTGCTGCTTCCATTGGTAGCTATGGTGCTTATTTGGCTGATGGCTCCGAGTATAGTGGGGACTACGGGGAAGCAATTACCCTGCAGGTCTT GAAAGAGTTCCACAGGAGGAGGTTGCAAATCCTGGCAAGTTCTGGTGCAGACTTGATTGCCCTGGAGACAATCCCTAACAAGCTTGAGGCACAGGCGTAT GCTGAGCTTCTTGAAGAAGAAGGCATCACCACGCCAGCATGGTTTTCCTTCTCTTCCAAGGATGGAGTCAATGTGGTCAGTGGGGATTCCATGGCTGAAT GTGCTGCTATTGCAGACTCGTGCAAGCAAGTTGTTGCTGTTGGAATCAACTGCACTCCTCCAAGATTTATCCATGACCTCATTCTCTCTATCCGCAAGAA ATCAACTGGGGTTTCGAATGAAGACTTCGTGTCATACGTAGGAAAGTGGCGAGAAGCTGGAGCTTCTCTCTTCGGTGGCTGCTGCAGAACTACTCCTAGT ACCATCAGAGGAATCTGCCGGGTTCTTTCGGAACCGTCAAAGTGA
AA sequence Show only first row Show all	>Lus10006602 pacid=23145307 polypeptide=Lus10006602 locus=Lus10006602.g ID=Lus10006602.BGIv1.0 annot-version=v1.0 MGQVNGETPSTLLSDFLHQCGGSAVVDGGFATELERYGADLNDPLWSAKCLVSSPQLVRRVHLDYLDAGANIILTASYQATIQGFESKGLPKEEAEHLLT RSVEIACEAREIYADKASQSSWDLVANGQISRHPVLVAASIGSYGAYLADGSEYSGDYGEAITLQVLKEFHRRRLQILASSGADLIALETIPNKLEAQAY AELLEEEGITTPAWFSFSSKDGVNVVSGDSMAECAAIADSCKQVVAVGINCTPPRFIHDLILSIRKKSTGVSNEDFVSYVGKWREAGASLFGGCCRTTPS TIRGICRVLSEPSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22740		HMT3	homocysteine S-methyltransfera...		Lus10006602 [exp]	0	1
AT3G22740		HMT3	homocysteine S-methyltransfera...		Lus10039356 [exp]	1.0	0.7280
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10028663 [exp]	7.2	0.7210
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10005434 [exp]	23.5	0.6231
AT1G48590			Calcium-dependent lipid-bindin...		Lus10042002 [exp]	29.8	0.7137
AT1G49740			PLC-like phosphodiesterases su...		Lus10014072 [exp]	35.2	0.6949
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10037447 [exp]	43.7	0.6772
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10007815 [exp]	46.9	0.6611
AT4G25030			unknown protein		Lus10041415 [exp]	58.6	0.6698
					Lus10039584 [exp]	103.7	0.5839
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10021248 [exp]	106.6	0.5940

Compare expression of checked genes

Lus10006602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.