Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22750 601 / 0 Protein kinase superfamily protein (.1) AT4G14780 564 / 0 Protein kinase superfamily protein (.1) AT3G01490 512 / 0 Protein kinase superfamily protein (.1) AT5G50000 509 / 0 Protein kinase superfamily protein (.1) AT3G63260 490 / 9e-174 ATMRK1 Protein kinase superfamily protein (.1.2) AT4G31170 244 / 6e-77 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 234 / 3e-73 Protein kinase superfamily protein (.1) AT3G46930 211 / 2e-63 Protein kinase superfamily protein (.1) AT5G58950 211 / 4e-63 Protein kinase superfamily protein (.1) AT4G35780 209 / 4e-62 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039357 [exp] 756 / 0 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10042622 [exp] 573 / 0 AT3G22750 605 / 0.0 Protein kinase superfamily protein (.1) Lus10022076 [exp] 516 / 0 AT3G22750 545 / 0.0 Protein kinase superfamily protein (.1) Lus10002368 [exp] 504 / 4e-179 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 502 / 2e-178 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10022227 [exp] 491 / 2e-173 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10030621 [exp] 263 / 1e-84 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10030868 [exp] 237 / 7e-75 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1) Lus10020374 [exp] 233 / 2e-72 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156000 [exp] 609 / 0 AT3G22750 608 / 0.0 Protein kinase superfamily protein (.1) Potri.010G083500 [exp] 603 / 0 AT3G22750 601 / 0.0 Protein kinase superfamily protein (.1) Potri.005G213200 [exp] 578 / 0 AT3G22750 575 / 0.0 Protein kinase superfamily protein (.1) Potri.002G049700 [exp] 577 / 0 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.012G079000 [exp] 514 / 0 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.017G072900 [exp] 511 / 0 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 509 / 0 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.015G074400 [exp] 507 / 0 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 241 / 1e-75 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 241 / 1e-75 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10006603 pacid=23145327 polypeptide=Lus10006603 locus=Lus10006603.g ID=Lus10006603.BGIv1.0 annot-version=v1.0 ATGGATTCAAGGATGGACCAGGATGTGGACAATATGGATATAGGGAAGAAGAAGGAAGAGAGTGATCATGAGAGGGGCATGAATTCTAAGGTGAAAGGCA GTGGAAGTGTTAGTAGCAAAGATATGATTTTTCGAGCAGATAGAATCGATTTGAAGATCCTGGATGTACAACTAGAGAAGCACCTGAGTAGGGTGTGGTC GAGGAACACCACAGACAACGCTAGGCCTAAAGAAGAGTGGGAGATTGATTTGTCTAAGTTGGATATAAAAACCCAGATAGCTCGTGGTACTTATGGCACT GTTTATAAAGGAACTTATGATAACCAAGATGTTGCAGTAAAAGTGTTGGATTGGGGGGAAGATGGCATGACTGCAGTATCTGAAGCTGATTCTCTTCGAG CATCATTTCGTCAAGAGGTTGCTGTTTGGCATAAGCTTGACCATCCTAATGTTACCAGATTCGTCGGAGCATCAATGGGAACTTCAAATCTCAAGGTTTC AAATAATAAATCTGATGGTCAGCATACTGCTAGAGCATGTTGTGTTGTGGTTGAGTATCAACCTGGTGGAACACTAAAGCAGTACTTGATAAGAAATAGG CGAAAGAAACTTGCTTATAAAGTCGTGATACAACTTGCTTTGGATCTCTCTAGGGGTTTAAGTTACCTGCATTCGAAGAAAATTGTGCACCGTGATGTAA AGTCGGAAAACATGTTGCTTGATAATCAGAGAAATCTTAGGATTGCGGATTTTGGTGTTGCTCGAGTGGAAGCTCAGAATCCAAGTGATATGACTGGTGA AACTGGTACCCTTGGATACATGGCACCTGAGGTTCTTGATGGCAAGCCATACAACAGAAGGTGTGATGTTTATAGCTTTGGCATATGTTTATGGGAAATC TATTGTTGTGATATGCCATATCCAGATCTTAGCTTTGCTGATGTGACGTCTGCGGTTGTTCGACAGGCGAGTTCATTCGTTTCTAACTTGAGGCCGGACA TACCGAGATGTTGTCCAAGTTCACTAGGAAGCATCATGAAGAAATGTTGGGATGCAGAATCAGAGAACCGCCCAGAAATGGCTCAAGTGGTGAAGATGTT GGAAGCCATTGATACAAGTAAGGGGGGAGGGATGATCCCTGAAGACCAAAACCCTGGTTGTTTCTGTTTCGCCCCAACCCGTGGCCCTTGA
AA sequence Show only first row Show all	>Lus10006603 pacid=23145327 polypeptide=Lus10006603 locus=Lus10006603.g ID=Lus10006603.BGIv1.0 annot-version=v1.0 MDSRMDQDVDNMDIGKKKEESDHERGMNSKVKGSGSVSSKDMIFRADRIDLKILDVQLEKHLSRVWSRNTTDNARPKEEWEIDLSKLDIKTQIARGTYGT VYKGTYDNQDVAVKVLDWGEDGMTAVSEADSLRASFRQEVAVWHKLDHPNVTRFVGASMGTSNLKVSNNKSDGQHTARACCVVVEYQPGGTLKQYLIRNR RKKLAYKVVIQLALDLSRGLSYLHSKKIVHRDVKSENMLLDNQRNLRIADFGVARVEAQNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEI YCCDMPYPDLSFADVTSAVVRQASSFVSNLRPDIPRCCPSSLGSIMKKCWDAESENRPEMAQVVKMLEAIDTSKGGGMIPEDQNPGCFCFAPTRGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22750			Protein kinase superfamily pro...		Lus10006603 [exp]	0	1
AT3G14260			Protein of unknown function (D...		Lus10008485 [exp]	12.6	0.7895
AT1G07040			unknown protein		Lus10030795 [exp]	45.6	0.7903
AT4G26470			Calcium-binding EF-hand family...		Lus10027114 [exp]	171.0	0.7359
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023184 [exp]	222.6	0.7382

Compare expression of checked genes

Lus10006603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.