Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14770 443 / 2e-146 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22780 407 / 1e-132 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22760 350 / 2e-111 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 179 / 1e-47 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 107 / 4e-24 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT4G29000 106 / 1e-23 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT5G25790 103 / 3e-23 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 86 / 8e-18 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039358 [exp] 1276 / 0 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10020590 [exp] 286 / 2e-92 AT4G14770 102 / 3e-25 TESMIN/TSO1-like CXC 2 (.1) Lus10002895 [exp] 219 / 1e-60 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002033 [exp] 187 / 2e-49 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 113 / 6e-26 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 112 / 2e-25 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 110 / 7e-25 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 109 / 1e-24 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 103 / 1e-22 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156100 [exp] 668 / 0 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.010G083400 [exp] 632 / 0 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 341 / 2e-105 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.018G030000 [exp] 204 / 1e-55 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.013G038301 [exp] 186 / 2e-51 AT3G22780 196 / 1e-55 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.006G251200 [exp] 185 / 7e-49 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.001G173600 [exp] 160 / 6e-41 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.001G184800 [exp] 107 / 3e-24 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.018G083000 [exp] 106 / 4e-24 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.006G160400 [exp] 107 / 7e-24 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [flax] [poplar] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Lus10006604 pacid=23145313 polypeptide=Lus10006604 locus=Lus10006604.g ID=Lus10006604.BGIv1.0 annot-version=v1.0 ATGGACACTCCCCAGAAGCCCAAGGCCACTCCTCCTGCTCTCTCTAAGTTCGAGGAATCCCCAGTGTTTAGCTACATAAACAGTCTCTCTCCAATCAAGC CAGTCAAGTCACTGAACATAACTCAAACATTTCATTCACTAAGTTTTTCAACCTTGCCTTCCATCTTCTCCTCCCCCCATATCACTTCCCACCACAAGGA GACCAGGTTCTTCAAAAGGCACAGCAACTGCCCAGATCCATCAAGACCTGAACATTCTTCTGAGAAGAAACAGGATGGTGGCAAAGAGATTGCTGTAGAG CCCCAAGAAAATTTCAACCAAGTGGTGTTTATTGGAGATGCCTCGGTTGATCTTCCTAAGTCATCCAAGTATGACTGTGGTAGCCCTGAAGCCCAGCAGA ACCCTCAACAACACGGTGCTTCGACAGATTGCATGTCTGAAGCTGTTGGAGCATCAGAATCAGTAGATCAATTTACCGGAAACGCTTCTCAGAACTGTCA ACCTCAAGGTCTAGGGAGCTATCAGACTCAACAAACTAAAGATGGTGCAGAATGTGATTGGGACAGTTTGATAGATGCTGCCGATCTATTGCTATTCAAC TCCCCTACTATCACCGAAGCTTTTAAAGCTGCGCATAAACATACAATCGACCGTGCTTCAGGGATTGCTACTTCCTTGATTGAGGCAAACGATCCAACTG ATTCACTTAACCAGACAGAAATGGGAGGGCCTTCTACTCAACCCAGTGATACTCTTCTGCCCAAGGAAGCAGATAGTGATAGCTGCATGCCTAGCAATAG TGACAAAGTACATAATGAGGCTGCTTCTAATTTGTATCGAGGCTTGAGAAGGCGTTGTCTTGATTTTGAAATGGTGGGAATGCATACGAAGAACTTGACC TATCAACAGATGCAAGCTGAAGAGAACAATGCTTATGAAGATAAGCAACTGGTTCCTTTCAATTGTAGCAGTGATTCCTCAAGGTGCATTGTACCTGGAA TGGGGTTGCACTTAAACTCTCTCGCAAGAAGTTTGAATACCAGAGGCAGTACCAATGAGACTTTGTCTTCTGAAATAAGTCTTGACCCTTTCAACTCTCC AATAATTGGACAAGAACTCCTTGAATCATTGAATATAGGCACCTCTGACGGGAACTTGGATGCCTCTGAAAACAATGTCAAACTTGCAGAGGATGTCTCA CCAGCATCTGCTTATTTGGTTAACGAAGAGTTTGGCTTGGGTAGCCCCAAAAAGAAAAGCTACTGTGAATGTTTTGCTGCTGGGGTATACTGCATCGAAC CGTGTTCTTGTCAAGATTGCTTCAATAAGCCCATTCACGAGGATACCGTACTGTCAACTCGTAAGCAGATAGAGTCCCGCAATCCACTTGCATTTGCTCC CAAAGTTATTAGGACATCTGAGCCTGGAGGAGCTGAAACTGGAGACGAACCGATGAAAACACCTGCATCTGCACGACACAAAAGAGGTTGCAATTGCAAG AAATCGAGTTGTCTGAAGAAATACTGTGAATGCTACCAGGGTGGAGTCGGATGCTCGATTAACTGCCGGTGTGAAGGGTGCAAGAATGCATTTGGCAGAA AAGATGGATCAACTTTACCAGAAACAGAAGCTGAACAAGAGGAGGATACTGAAGCTAGTGAGAAGAACCGATTAGAAACATCCGTACAGCAAATTGATGT CCCGAACAGTGAAGAGGAGCAAAACCATAACCATGGTCTCCCTGCAACACCATTGCAGATTTCCAGACCATTGGTTCAGCTACCATTCTCTTCTTCCTCA GCCATAAAACCACCAAGGTCTCTTCTAGGAATTTCGTCAAATGGATTATTCCCGGGCTACAAATATGGGAAACCAAGCATCATAAGAGCTCAATCCAAGC TTGAAAAAAGACCATTCCAGAGCAGTGGTGAAGATGAGATGCCTGAAATCCTACAAGGAGAAGGAAGCTTCTCGCCGGGGATGGGAATGAAGGTGTCGTC TCCGAACAGCAAGAGGGTATCTCCCCCTCACCACAACTACAACAACAATAATAAGATGGGATCATCAACAACATCTCCGGGACGTAAAAGTGGGAGGAAG CTGATATTGCACTCCATACCTTCTTTTCCTTCTCTAACTCCGCCGCCACTGAAATGA
AA sequence Show only first row Show all	>Lus10006604 pacid=23145313 polypeptide=Lus10006604 locus=Lus10006604.g ID=Lus10006604.BGIv1.0 annot-version=v1.0 MDTPQKPKATPPALSKFEESPVFSYINSLSPIKPVKSLNITQTFHSLSFSTLPSIFSSPHITSHHKETRFFKRHSNCPDPSRPEHSSEKKQDGGKEIAVE PQENFNQVVFIGDASVDLPKSSKYDCGSPEAQQNPQQHGASTDCMSEAVGASESVDQFTGNASQNCQPQGLGSYQTQQTKDGAECDWDSLIDAADLLLFN SPTITEAFKAAHKHTIDRASGIATSLIEANDPTDSLNQTEMGGPSTQPSDTLLPKEADSDSCMPSNSDKVHNEAASNLYRGLRRRCLDFEMVGMHTKNLT YQQMQAEENNAYEDKQLVPFNCSSDSSRCIVPGMGLHLNSLARSLNTRGSTNETLSSEISLDPFNSPIIGQELLESLNIGTSDGNLDASENNVKLAEDVS PASAYLVNEEFGLGSPKKKSYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLSTRKQIESRNPLAFAPKVIRTSEPGGAETGDEPMKTPASARHKRGCNCK KSSCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDGSTLPETEAEQEEDTEASEKNRLETSVQQIDVPNSEEEQNHNHGLPATPLQISRPLVQLPFSSSS AIKPPRSLLGISSNGLFPGYKYGKPSIIRAQSKLEKRPFQSSGEDEMPEILQGEGSFSPGMGMKVSSPNSKRVSPPHHNYNNNNKMGSSTTSPGRKSGRK LILHSIPSFPSLTPPPLK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Lus10006604 [exp]	0	1
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10012799 [exp]	6.2	0.9471
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	9.3	0.9408
AT5G23910			ATP binding microtubule motor ...		Lus10027488 [exp]	14.0	0.9380
AT3G54750			unknown protein		Lus10016201 [exp]	15.0	0.9235
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10030028 [exp]	16.7	0.9338
AT1G20060			ATP binding microtubule motor ...		Lus10033133 [exp]	17.5	0.9318
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10010519 [exp]	17.8	0.9325
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	18.7	0.9342
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	20.5	0.9243
AT1G03470			Kinase interacting (KIP1-like)...		Lus10040904 [exp]	21.7	0.9309

Compare expression of checked genes

Lus10006604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.