Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32410 203 / 3e-67 Vacuolar protein sorting 55 (VPS55) family protein AT3G11530 124 / 3e-36 Vacuolar protein sorting 55 (VPS55) family protein (.1), Vacuolar protein sorting 55 (VPS55) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004221 [exp] 109 / 2e-28 AT5G27720 182 / 2e-57 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10029426 [exp] 108 / 4e-27 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087500 [exp] 225 / 5e-76 AT1G32410 180 / 1e-59 Vacuolar protein sorting 55 (VPS55) family protein Potri.001G146600 [exp] 219 / 9e-74 AT1G32410 176 / 6e-58 Vacuolar protein sorting 55 (VPS55) family protein Potri.006G209100 [exp] 125 / 4e-37 AT3G11530 210 / 3e-72 Vacuolar protein sorting 55 (VPS55) family protein (.1), Vacuolar protein sorting 55 (VPS55) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04133 [flax] [poplar] Vps55 Vacuolar protein sorting 55
Representative CDS sequence Show only first row Show all	>Lus10006605 pacid=23145299 polypeptide=Lus10006605 locus=Lus10006605.g ID=Lus10006605.BGIv1.0 annot-version=v1.0 ATGCTGAGAATTTGGTGGAGTGTGCCTAATGTCAGCTTAAGTCCTTCTCAAGTTCTTTCTGCTTCCACATTGGTCCTGTATTCACATTGGGCTGAAATGG ATACTCAATGGTACCTTAGGATTCTGATTACTCCGAGCCATCCCTCTCACTTCCTCACCCTGATTTTATCCTTATGTGATGGAGAAGTAAAAGCCTCCAT TTTATCTCTGAGGATAAGCAATGCGTATTCTATTCTTTGTGAGCAGGTCATGGCAGACTTACCTGGTTACATGCGTGCTTGCTTGCAAACTGGCCATCTT GCTTTTCTAGCTATTCTGGTTTCAAGCGGAATCGTGCTGCAAATCCTGGCATGTGCTCTGTACAATAATTGGTGGCCAATGCTAACTGTTGTGATGTATG CGATCCTTCCAATGCCATTATTGTTCTTTGCTGGGTCGGATTCCATCTTCCAAGAATCTGATAACAGCTGGGTGAATGCGACCAAGTTTATGACAGGAGC ATCTACTGTTGGAAGTATTGCGATACCAGTGATCTTAAAACATGCCGGGGTTATCGGATGGGGTGCACTGGCAATGGAACTGTCGTCATTTATGGTGTTT GTGATAGCGATTATGTGTTACATGAGTATGTATGATGAAGATGGCTATAGCAATATGATTTGA
AA sequence Show only first row Show all	>Lus10006605 pacid=23145299 polypeptide=Lus10006605 locus=Lus10006605.g ID=Lus10006605.BGIv1.0 annot-version=v1.0 MLRIWWSVPNVSLSPSQVLSASTLVLYSHWAEMDTQWYLRILITPSHPSHFLTLILSLCDGEVKASILSLRISNAYSILCEQVMADLPGYMRACLQTGHL AFLAILVSSGIVLQILACALYNNWWPMLTVVMYAILPMPLLFFAGSDSIFQESDNSWVNATKFMTGASTVGSIAIPVILKHAGVIGWGALAMELSSFMVF VIAIMCYMSMYDEDGYSNMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32410			Vacuolar protein sorting 55 (V...		Lus10006605 [exp]	0	1
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034975 [exp]	1.7	0.8819
AT1G65720			unknown protein		Lus10031363 [exp]	3.0	0.9120
AT1G61740			Sulfite exporter TauE/SafE fam...		Lus10020068 [exp]	3.5	0.8978
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000589 [exp]	8.7	0.8736
AT3G02720			Class I glutamine amidotransfe...		Lus10010964 [exp]	9.5	0.8574
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10012458 [exp]	9.9	0.8670
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	13.9	0.8587
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	13.9	0.8569
AT1G80630			RNI-like superfamily protein (...		Lus10024070 [exp]	14.7	0.8191
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038356 [exp]	16.0	0.8690

Compare expression of checked genes

Lus10006605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.