Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22790 329 / 1e-97 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 292 / 5e-85 kinase interacting (KIP1-like) family protein (.1) AT1G03080 115 / 2e-26 kinase interacting (KIP1-like) family protein (.1) AT4G02710 53 / 8e-07 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039359 [exp] 1119 / 0 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 340 / 3e-102 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 329 / 3e-98 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10022079 [exp] 189 / 3e-50 AT1G03080 1179 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 111 / 7e-25 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 105 / 3e-23 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 51 / 2e-06 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156200 [exp] 512 / 1e-167 AT3G22790 762 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 509 / 4e-162 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 225 / 4e-62 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 142 / 6e-35 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006606 pacid=23145302 polypeptide=Lus10006606 locus=Lus10006606.g ID=Lus10006606.BGIv1.0 annot-version=v1.0 ATGGGTGTTCATCAAGTGTTCCAGTCACTTCAGTTTGATCCAATCGATGAGGATGAACAAGGAGCTGATGATGGACTAGTTTCTTTCGGGCGTATACTGG ACAACATTGAGTATATAAAGGGCTTGCTCCAGAAAGAGGAGGATCAGAAGCAGCTAATAGCAGTTGAAAACATGGTGATCTCAACCTTATTTGAACAATT GAAATCCGAAGGTGCTGAACTTGAGTCTGAGAAAAAAGTTCTGGAGCAGCAGTACAAAGCAACAACAGAACAATTCACCATTCTTCAGCTGGAAAATCAT GAACTCAAGGAGATGAGTAGGCAGTTGAATTTGGAAGTGAGCAAAGGAGAACAGCAGAAGGGAGAACTTAAGGTTGAGTTGGAAACTCAGCAATTGAACC TGGAAAATCTGCAAGGTTCTTACATCTCATTGCAAGAAGAGAACTTCGAAGTGCTTAAAGAAAATAATTCTTTGCAACAGAGGTTCTTAAACTTGAAAAT GGAAATGCATAAGCTTGAGGAGGAAAACAACAACATCATCCAGGAAGCAACATCGTTGGCAAACCTGTCATCTGTTTATGAGAGTTTTGGAAAGCAAAAG GCTGAGGAACTTGGAGCACTTTCTGGAGATGTCAGTCATCTCAGGTCTATTAACGGTGGACTCAGCAAGAAGATAGAGATGTTGGAGACGATGTTGGAAA CCAAAGAATCAGAGTGTTCACATCACAAAGAAACAATCCAGAAGCTGCAACTGAACCTGCAGAACGGCCAAAAACTAAATGACCAATTAAGAAATGAACT TGTGATTGGAAAAGACTTTTTGGGGACAAAAGCATCAGAGCTTCTAGAAGTGAAGCAAAACTTGAAGGCCACTCAGGAGTTTAATGCAGAATTCTGTAGA ACCATTGAGGAACTAAAGAGGGAGTCTGAAGAATCGGTTTTAGTTAGAGAAAAGTTAGAGAAGCAGATTTCAAAATTATCTAATGACAACACAACCTGCA AAGTGGAACTTGAACAGCTTCATATAGCAAACGAAAATCTGGAGTCAGAAGTTAGCACATTGCGCAAAGATATTGAAGAACACAGGGTTAGAGAAGAAAA TTTAAGTCTTGAGCTGCAAGAGAGAAGTAATGATTCCGAGCTTTGGGAGGCTGAAGCTTCGTCATTTTTCTTCGATCTTCAAATATCCTCAATCCGGGAA GTCCTGCTTGAGAAGAAGGTTCATGAGCTCTCTGCAGTTTGTGCAAGCCTTGGAGATGAAAATGCAACAAAAGAAGGGGAGATTGGCCAGATGAAAGCAA AGCTTGTTTCTTTGGAATGTGAAATTGAAGGACTCAAATCTCAGTTGTCTGCATATGCTCCAGCTATAGCCTCCTTGAAAGATAGCATTGAATCCCTAGA GCAGAATGCTCTTCTTCAGGCGAAGCTTTCTGCAGCTGGTGAAGATAACCAGAAGAATGTGGAAATGGCTACTGAACTTTTCGAAGCAAGTCATGAAGAA CTAATAAACGATCAGCCAGGTGTTGCGGCAGATGGGATGTCCGATTTGCTAAGGATGCTACCAAGAGTTAAAACAGTGGAAAAGGCAATGCTTGAAGAAA TCAATAGGCTTGAAGCTGAGAAGGCCACAGCAGTGAAGGAGAAGCTTGGAATGGGCGAGAAGGTGAAGTCAAGGAGGAGATCAAGCCGCGGAGACAGCTT TAACAAGAGAGAAATAGTGCCTGAGAATAATTCAACTGACAGTACTAATTCGCAGAACAAACCCGAGACACCTGAAGCAAAGAACAGCATTCTGATGAAA GACATTCAACTCGATCAGGCCTCAGGCAGTTCTTCGCGCAGAAGGATGAAAAGGGACGTCTCCAGAGCTGATGATCAGATGCTTGAGCTGTGGGAATTTG CGGAGAAAGATAACACCCTTTTTCCTCCATTTCACCACCACAACCGAAACCGGAAAGATCATGGGGAGGCTCACTGCTGA
AA sequence Show only first row Show all	>Lus10006606 pacid=23145302 polypeptide=Lus10006606 locus=Lus10006606.g ID=Lus10006606.BGIv1.0 annot-version=v1.0 MGVHQVFQSLQFDPIDEDEQGADDGLVSFGRILDNIEYIKGLLQKEEDQKQLIAVENMVISTLFEQLKSEGAELESEKKVLEQQYKATTEQFTILQLENH ELKEMSRQLNLEVSKGEQQKGELKVELETQQLNLENLQGSYISLQEENFEVLKENNSLQQRFLNLKMEMHKLEEENNNIIQEATSLANLSSVYESFGKQK AEELGALSGDVSHLRSINGGLSKKIEMLETMLETKESECSHHKETIQKLQLNLQNGQKLNDQLRNELVIGKDFLGTKASELLEVKQNLKATQEFNAEFCR TIEELKRESEESVLVREKLEKQISKLSNDNTTCKVELEQLHIANENLESEVSTLRKDIEEHRVREENLSLELQERSNDSELWEAEASSFFFDLQISSIRE VLLEKKVHELSAVCASLGDENATKEGEIGQMKAKLVSLECEIEGLKSQLSAYAPAIASLKDSIESLEQNALLQAKLSAAGEDNQKNVEMATELFEASHEE LINDQPGVAADGMSDLLRMLPRVKTVEKAMLEEINRLEAEKATAVKEKLGMGEKVKSRRRSSRGDSFNKREIVPENNSTDSTNSQNKPETPEAKNSILMK DIQLDQASGSSSRRRMKRDVSRADDQMLELWEFAEKDNTLFPPFHHHNRNRKDHGEAHC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22790			Kinase interacting (KIP1-like)...		Lus10006606 [exp]	0	1
AT3G22790			Kinase interacting (KIP1-like)...		Lus10039359 [exp]	2.4	0.8897
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10031129 [exp]	8.1	0.9122
AT3G56370			Leucine-rich repeat protein ki...		Lus10030526 [exp]	9.2	0.8730
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018769 [exp]	10.6	0.8684
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10007440 [exp]	12.5	0.8252
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10025057 [exp]	14.0	0.8546
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	14.7	0.8865
AT2G04865			Aminotransferase-like, plant m...		Lus10001163 [exp]	16.3	0.8569
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	21.0	0.8370
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10038861 [exp]	21.0	0.8668

Compare expression of checked genes

Lus10006606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.