Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03080 59 / 1e-10 kinase interacting (KIP1-like) family protein (.1) AT3G22790 54 / 5e-09 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 53 / 9e-09 kinase interacting (KIP1-like) family protein (.1) AT4G02710 50 / 1e-07 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039359 [exp] 244 / 3e-75 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 112 / 2e-29 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 109 / 2e-28 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 50 / 1e-07 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 44 / 2e-05 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 42 / 8e-05 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10022079 [exp] 42 / 0.0001 AT1G03080 1179 / 0.0 kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083300 [exp] 120 / 3e-32 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156200 [exp] 112 / 3e-29 AT3G22790 762 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 68 / 8e-14 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 58 / 2e-10 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006607 pacid=23145324 polypeptide=Lus10006607 locus=Lus10006607.g ID=Lus10006607.BGIv1.0 annot-version=v1.0 ATGAAAGCCAAGCTAGAAATGACAAGGAAATTGAGTAAGAAACCAAACATCATTGAGTTGGAAAAGGTGAAGATGAGGCTGCAAGATGTGGAAGAGGCAG TTGTCCAGCTGGCTGAAGCTAATGATCATCTGAGGAAGGATGTTGGGGAGAGGTCCACCTCATCTCCAGAAGAGATGATGATCGCAGCGGAGAGAAATGG AGTAACTGAGCAGGCAAGAAAAGAGTCAGAGAAGTTGGGAAGATTGCAGTTTGAAGTGCAGAACATCCAATACGTGCTGCTGAAACTCGATGGCGAGAAT GACAAGAATGGGAAGAAGAACAAGGTGCAGAGATTTTATGGGAGCAGAACAGGAGTGCTGTTGAGGGATTTCATCAGCAGTGGGAAGAGGAGGAGCTTGA GGAGAAAGAAGAAGTCGTGTTTCTGCGGATGTGGGAGACCGGCAGCCATTGAAGATTGA
AA sequence Show only first row Show all	>Lus10006607 pacid=23145324 polypeptide=Lus10006607 locus=Lus10006607.g ID=Lus10006607.BGIv1.0 annot-version=v1.0 MKAKLEMTRKLSKKPNIIELEKVKMRLQDVEEAVVQLAEANDHLRKDVGERSTSSPEEMMIAAERNGVTEQARKESEKLGRLQFEVQNIQYVLLKLDGEN DKNGKKNKVQRFYGSRTGVLLRDFISSGKRRSLRRKKKSCFCGCGRPAAIED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03080			kinase interacting (KIP1-like)...		Lus10006607 [exp]	0	1
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10041255 [exp]	2.0	0.8113
AT5G41685			Mitochondrial outer membrane t...		Lus10004754 [exp]	3.9	0.7387
AT3G53540			unknown protein		Lus10025295 [exp]	5.7	0.7503
AT5G01090			Concanavalin A-like lectin fam...		Lus10027751 [exp]	6.3	0.7252
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10041769 [exp]	14.4	0.7353
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	18.8	0.7350
AT3G14080			Small nuclear ribonucleoprotei...		Lus10013161 [exp]	25.0	0.6913
AT5G10660			calmodulin-binding protein-rel...		Lus10042442 [exp]	25.6	0.6348
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	25.7	0.7166
AT4G30850		HHP2	heptahelical transmembrane pr...		Lus10036605 [exp]	31.5	0.6831

Compare expression of checked genes

Lus10006607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.