Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22800 160 / 8e-48 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 149 / 2e-43 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 144 / 1e-40 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 141 / 1e-39 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 136 / 4e-38 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 129 / 2e-35 LRX1 leucine-rich repeat/extensin 1 (.1) AT4G28380 123 / 1e-34 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 112 / 3e-30 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 113 / 5e-30 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 112 / 1e-29 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039362 [exp] 272 / 2e-92 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 153 / 1e-45 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 148 / 3e-42 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 144 / 3e-42 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 147 / 4e-42 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 135 / 1e-38 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 120 / 6e-33 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 112 / 2e-29 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10027935 [exp] 112 / 2e-29 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083100 [exp] 170 / 1e-52 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 162 / 3e-49 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 156 / 8e-46 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 152 / 8e-44 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 149 / 3e-43 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G081200 [exp] 149 / 1e-42 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.007G139200 [exp] 135 / 6e-39 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 135 / 9e-38 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 134 / 9e-38 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 115 / 1e-30 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10006610 pacid=23145339 polypeptide=Lus10006610 locus=Lus10006610.g ID=Lus10006610.BGIv1.0 annot-version=v1.0 ATGGCGGAGACGCTGGATGAGATTATCCTCTCCAATTTGGGGCTTTCGGGTTGCTTGAGGCCCGAGATTGGCGAACTGAAGGAGCTCAAGGTACTCGATC TGAGCTGTAATAAATTGATTGGGCCGTTGCCTGAATCTATTGCCGGGATGAAGAATTTGGAGCAGCTGGACGTCGGGCATAACAAGCTGTCGGGTCGGAT CCCTAAGGGGATTTGCTTGCTCCCGAATTTGGAAAATTTCATGTACAAGAATAATTACTTCACCGGGGAGCCGCCGGAGTGTTTGAGGCTGGGAGCAGGG AACAATGACCGGAAGAATTGTATTCCGGGGAGGCCGGGGCAGCGGTCGGCGGCGGAGTGCGCCTTGTTTAATGCAAATCCATTTGATTGCGCTGCCAGTA TTTGCCCGCTTCAGTAA
AA sequence Show only first row Show all	>Lus10006610 pacid=23145339 polypeptide=Lus10006610 locus=Lus10006610.g ID=Lus10006610.BGIv1.0 annot-version=v1.0 MAETLDEIILSNLGLSGCLRPEIGELKELKVLDLSCNKLIGPLPESIAGMKNLEQLDVGHNKLSGRIPKGICLLPNLENFMYKNNYFTGEPPECLRLGAG NNDRKNCIPGRPGQRSAAECALFNANPFDCAASICPLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	0	1
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	2.0	0.9338
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	2.4	0.9310
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	3.5	0.9172
AT5G48385			FRIGIDA-like protein (.1)		Lus10004132 [exp]	4.2	0.8816
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	5.3	0.9101
AT2G20875		EPF1	epidermal patterning factor 1 ...		Lus10018576 [exp]	5.3	0.8893
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	5.5	0.8789
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	8.1	0.9027
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10012151 [exp]	8.8	0.8751
AT4G20160			unknown protein		Lus10036249 [exp]	9.9	0.8774

Compare expression of checked genes

Lus10006610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.