Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22800 436 / 5e-151 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 431 / 4e-145 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT3G24480 412 / 4e-141 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 416 / 5e-138 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 369 / 2e-120 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 364 / 2e-119 LRX1 leucine-rich repeat/extensin 1 (.1) AT4G28380 353 / 2e-119 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 347 / 2e-116 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 344 / 6e-112 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 330 / 1e-106 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039363 [exp] 690 / 0 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 479 / 2e-168 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 412 / 9e-143 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 408 / 1e-136 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 377 / 8e-129 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 363 / 3e-121 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10037905 [exp] 358 / 1e-120 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 316 / 3e-101 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 311 / 4e-99 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083000 [exp] 456 / 1e-159 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 441 / 2e-154 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 412 / 5e-140 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 413 / 4e-139 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 385 / 9e-132 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 382 / 1e-128 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 367 / 5e-123 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G035100 [exp] 369 / 9e-123 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 373 / 1e-121 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.014G036700 [exp] 352 / 2e-116 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006611 pacid=23145334 polypeptide=Lus10006611 locus=Lus10006611.g ID=Lus10006611.BGIv1.0 annot-version=v1.0 ATGAAAACCTTAAACCCTTTCATTAGTACCCTTTGGGCCATCTTTCTCTTCCTCGCTCAACCCTCTCACCAAGCTTCTCCTCCTCCGCCGCCTCCGAAAA ATTATCCGACCATCTCAAACCCCAGACTCCTCAACGCCTACGTGGCCCTCTACGCATGGAAAAAAGCCATGACTTCCGACCCAAGAAACTTCACCTCCGA TTGGTATGGGCCAAACGTCTGCAACTACAACGGCGTCTACTGCGCCCCGGCCCCCGACGATCCCAAAATCCAAACTGTAGCCGGAATAGACATCAACCAC GCTAACATCTCCGGCTACCTCCCGGAGGATCTCGGCCTCCTCGCCGACCTCGCCCTCTTCCACATCAACTCCAACCGCTTCGTTAAAACCCTCCCATACA GCTTCCGCTACCTCAAGCTCCTCTTCGAGCTCGATATAAGCAACAACCGATTCTCCGGCGACTTCCCTTCCGTCGTGTTCGAACTTCCTTCTCTAAAGTT CCTAGACATAAGGTTCAACCAGTTCCAAGGAAACGTCCCTTCCAAGCTGTTTGAGACCAAGTTTGACGCCATATTCATAAACAACAACGCGTTCACGTCG TCGCTGCCTTCTAACTTGGGGAACACGACGGCGTCAGTGTTGGTGTTGGCGAATAACAACTTCGGCGGGTCGTGCATCCCGGCGAGTCTGTTGACGATGG GTCCCACGTTGACCCAGGTGATTTTGAGCAATATGGGCTTGAGGGGGTGTTTGCAGCCCAACATAGGGGCGTTGGATCAGCTGAAGGTGTTCGACGTCAG CAATAATGACCTTGTGGGTCCCCTTCCTGAATCGATCGTGAGGATGACCAAGTTGGAGCAGTTGAATGTGGCCCACAACAGGCTGTCCGGGGAGATACCG TCCGGTATCTGCGCGTTGCCGCGGTTGCAGAATTTTACTTTTTCCTACAATTACTTCAATAAGGAACCCGACGTTTGTCTCCGGCTGCCGGCGAAAGATG ACCGGAAGAACTGTTTGCCGAAGCGGCCGTTGCAGAGAAATCCTGGTGAATGCAAGATTTACCCTGTTCATTGTAGCTCCTTTGGTTGCATGCCTCCTCC ACCGCCACCACCACCTCCGCCTCCTCCTCCCCCTCCTCCACCTCCACCTCCTCCCCCTCCGCCACCTCCGCCGCCATCACCACCGCCACCGTGCCCACCA CCTCCACCTCCGCCGTCGCCGCCACCTCCAATGCATCATTACGAGTACCCTTGA
AA sequence Show only first row Show all	>Lus10006611 pacid=23145334 polypeptide=Lus10006611 locus=Lus10006611.g ID=Lus10006611.BGIv1.0 annot-version=v1.0 MKTLNPFISTLWAIFLFLAQPSHQASPPPPPPKNYPTISNPRLLNAYVALYAWKKAMTSDPRNFTSDWYGPNVCNYNGVYCAPAPDDPKIQTVAGIDINH ANISGYLPEDLGLLADLALFHINSNRFVKTLPYSFRYLKLLFELDISNNRFSGDFPSVVFELPSLKFLDIRFNQFQGNVPSKLFETKFDAIFINNNAFTS SLPSNLGNTTASVLVLANNNFGGSCIPASLLTMGPTLTQVILSNMGLRGCLQPNIGALDQLKVFDVSNNDLVGPLPESIVRMTKLEQLNVAHNRLSGEIP SGICALPRLQNFTFSYNYFNKEPDVCLRLPAKDDRKNCLPKRPLQRNPGECKIYPVHCSSFGCMPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPCPP PPPPPSPPPPMHHYEYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	0	1
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	1.7	0.9160
AT3G29034			unknown protein		Lus10033010 [exp]	2.0	0.9362
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Lus10009663 [exp]	2.4	0.9341
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	3.9	0.9141
AT2G23810		TET8	tetraspanin8 (.1)		Lus10023216 [exp]	8.5	0.9158
AT2G03240			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026622 [exp]	9.9	0.8614
AT5G17680			disease resistance protein (TI...		Lus10003749 [exp]	12.0	0.8901
					Lus10016767 [exp]	12.3	0.8363
AT3G02645			Plant protein of unknown funct...		Lus10016396 [exp]	14.0	0.8550
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10039006 [exp]	17.0	0.8594

Compare expression of checked genes

Lus10006611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.