Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14750 250 / 1e-78 IQD19 IQ-domain 19 (.1) AT3G16490 98 / 4e-22 IQD26 IQ-domain 26 (.1) AT4G23060 97 / 2e-21 IQD22 IQ-domain 22 (.1) AT1G01110 79 / 3e-15 IQD18 IQ-domain 18 (.1.2) AT4G00820 77 / 5e-15 IQD17 IQ-domain 17 (.1) AT3G49260 75 / 3e-14 IQD21 IQ-domain 21 (.1.2.3) AT4G29150 74 / 6e-14 IQD25 IQ-domain 25 (.1) AT5G07240 72 / 3e-13 IQD24 IQ-domain 24 (.1) AT1G51960 71 / 5e-13 IQD27 IQ-domain 27 (.1) AT1G72670 68 / 4e-12 IQD8 IQ-domain 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021904 [exp] 403 / 5e-137 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10041188 [exp] 353 / 2e-117 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10039366 [exp] 291 / 6e-97 AT4G14750 71 / 2e-14 IQ-domain 19 (.1) Lus10039367 [exp] 112 / 1e-29 AT4G14750 59 / 2e-11 IQ-domain 19 (.1) Lus10011131 [exp] 91 / 2e-19 AT3G16490 223 / 2e-68 IQ-domain 26 (.1) Lus10012608 [exp] 81 / 7e-16 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10010104 [exp] 80 / 1e-15 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10014870 [exp] 77 / 1e-14 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10017841 [exp] 76 / 1e-14 AT4G23060 258 / 2e-80 IQ-domain 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082600 [exp] 442 / 3e-153 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.008G156700 [exp] 423 / 5e-145 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.001G190500 [exp] 101 / 3e-23 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.001G108800 [exp] 98 / 1e-21 AT4G23060 179 / 1e-50 IQ-domain 22 (.1) Potri.012G139800 [exp] 97 / 2e-21 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.003G047800 [exp] 90 / 3e-19 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.013G038901 [exp] 86 / 7e-18 AT4G14750 128 / 2e-33 IQ-domain 19 (.1) Potri.014G104600 [exp] 81 / 3e-16 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.005G051500 [exp] 81 / 3e-16 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.002G178500 [exp] 78 / 3e-15 AT4G00820 458 / 1e-156 IQ-domain 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10006613 pacid=23145341 polypeptide=Lus10006613 locus=Lus10006613.g ID=Lus10006613.BGIv1.0 annot-version=v1.0 ATGGGGAAGACAGGAAAATGGCTTAAGGGTTTCTTGACTGGGAAGAAAGAGAAGGACAAGGAGAAGGAGAGACGGAGAGATAATAGCAGAGATCATAAGG AGATCATATGTATTGATTCCCAGGATTCCAATCCATCGTCTACTCCAATTTCTCACCCACCAACCACTCCTAAAGAGAAGCGGAGATGGAGTTTCAGAAG GTCATCAGGTACTGGAATGGCCAATTCTGCAGAACCATCTTCCCCAGCCGCCGCTGCAAAGCCGTCGGAGATGCAAGGTCAATTAGATTCTGAAAATGAG CAGAACAAACATGCTATGGCCATAAAAGCAGCGGCTGTTATCACTCTAAATGAAAAAAGGAACGCCGCCGTTAAGATTCAATCCGTATTCCGATCCTACT TGGCGAGGAAGGCATTGCGAGCGCTGAAAGGATTGGTGAAGATTCAGGCACTGGTGAGAGGCCATCTGGTTAGAAAACAGGCCACCGCTACGCTTCGCTG TATGCAAGCCTTGGTGACTCTCCAGGCTAAAGCTCGAGCTCAGAGGATTCGTACGGCGGAGGACGGAAGACCCCCCACCGCCAATAGACCTTACTCTTCT CACAGAAGATCCACTCAGGAGAATCGACTCAGACAAACTAACTACGTAAAGCATCATATTACTAGCCTTTATCCCTACTTTCTCTGGACTCCTAATTCCA CTAGGAAGAAAAAGGAAAACGTTAATGGATTCTCTGTTTCCTCGTCATCGCAGGATTCTGACAGAGGCGGGATGGAGGAGAACATCAAGATAGTGGAAAT GGACCTGGGAGAGTCGAAAGGAAGTGCGGCCACTAAGAGCAGAAACAGCTATTCATCTTACAACCCGCCACAATCCGAAAGAGGAGCAGATCGGAGATTC TCAAATCAATATTCGCAATCGGATTTAACGGAGATGAGCCCTAGAGCTAGCAGCGGTCATTTCGAGGAGTATTCATTCGGCACCGCTCAGAGCAGCCCGC AATGCTACTCCGCGGTGTCCAGACCCGACCCGTCCAGGGTTCCGTTCGCGTTCCCTCGACCCGATTATCCGGAATCCATGGCGTCCGATTACCAGCTGTT CCCGAACTATATGGCGAACACGGAGTCGTTTAGGGCGAAGGTTAGGTCGCAGAGCGCGCCCAAGACCCGGCCCGCGGAATGTTACGAGCGGCAGCCAAGC CGACGGCGGGCGTCGGTGGAAGGGAGGAACATACCGCGCGCGGTGAGGATGCAGCGGTCGTCGTCAAACGTGGGAGCTCCGGTGTCCGTGGGACAGAACT ACCAGTTCCCATGGGCGATTAAGCTGGACAGATCGTCGGTTTCGCTGCAGGAGAGCGAGTGTGGATCGAGCAGTACCGTGCTTACTAATTCCAATTACTG CAGATCGCTTGTTGGGTTCGATGTGAGTACTAATGGATAA
AA sequence Show only first row Show all	>Lus10006613 pacid=23145341 polypeptide=Lus10006613 locus=Lus10006613.g ID=Lus10006613.BGIv1.0 annot-version=v1.0 MGKTGKWLKGFLTGKKEKDKEKERRRDNSRDHKEIICIDSQDSNPSSTPISHPPTTPKEKRRWSFRRSSGTGMANSAEPSSPAAAAKPSEMQGQLDSENE QNKHAMAIKAAAVITLNEKRNAAVKIQSVFRSYLARKALRALKGLVKIQALVRGHLVRKQATATLRCMQALVTLQAKARAQRIRTAEDGRPPTANRPYSS HRRSTQENRLRQTNYVKHHITSLYPYFLWTPNSTRKKKENVNGFSVSSSSQDSDRGGMEENIKIVEMDLGESKGSAATKSRNSYSSYNPPQSERGADRRF SNQYSQSDLTEMSPRASSGHFEEYSFGTAQSSPQCYSAVSRPDPSRVPFAFPRPDYPESMASDYQLFPNYMANTESFRAKVRSQSAPKTRPAECYERQPS RRRASVEGRNIPRAVRMQRSSSNVGAPVSVGQNYQFPWAIKLDRSSVSLQESECGSSSTVLTNSNYCRSLVGFDVSTNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10006613 [exp]	0	1
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10023326 [exp]	7.1	0.8398
AT1G54570			Esterase/lipase/thioesterase f...		Lus10018998 [exp]	12.0	0.8150
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10042445 [exp]	19.7	0.8361
AT4G34880			Amidase family protein (.1)		Lus10025066 [exp]	21.8	0.7443
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036709 [exp]	23.6	0.8226
AT2G30990			Protein of unknown function (D...		Lus10029830 [exp]	26.7	0.8259
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	28.1	0.8276
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Lus10024435 [exp]	29.5	0.8159
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031849 [exp]	30.6	0.7804
AT4G17540			unknown protein		Lus10004359 [exp]	31.4	0.8058

Compare expression of checked genes

Lus10006613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.