Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14740 447 / 2e-154 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT3G22810 431 / 6e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G43870 216 / 1e-64 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G63300 181 / 2e-52 FKD1 FORKED 1 (.1.2) AT4G32785 112 / 2e-29 unknown protein AT4G17350 81 / 2e-16 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G47440 80 / 5e-16 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G16670 75 / 2e-14 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G32780 44 / 9e-05 phosphoinositide binding (.1) AT5G57770 43 / 0.0004 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041187 [exp] 276 / 2e-88 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10039370 [exp] 264 / 4e-85 AT4G14740 219 / 2e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10014703 [exp] 186 / 7e-56 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10021903 [exp] 159 / 3e-41 AT5G43870 159 / 8e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10009509 [exp] 117 / 5e-30 AT3G22810 180 / 2e-55 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10004079 [exp] 100 / 4e-23 AT3G63300 167 / 2e-47 FORKED 1 (.1.2) Lus10004734 [exp] 87 / 3e-18 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10014704 [exp] 82 / 5e-18 AT3G63300 143 / 9e-41 FORKED 1 (.1.2) Lus10009508 [exp] 43 / 0.0001 AT4G32780 71 / 4e-15 phosphoinositide binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213800 [exp] 354 / 8e-118 AT3G63300 388 / 7e-131 FORKED 1 (.1.2) Potri.002G049200 [exp] 348 / 2e-115 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.010G082400 [exp] 257 / 3e-80 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.008G157000 [exp] 250 / 1e-77 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.018G042000 [exp] 111 / 2e-26 AT4G32785 159 / 1e-47 unknown protein Potri.003G077900 [exp] 98 / 5e-22 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.001G156700 [exp] 86 / 6e-18 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation CL0266 [flax] [poplar] PH PF08458 [flax] [poplar] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Lus10006614 pacid=23145330 polypeptide=Lus10006614 locus=Lus10006614.g ID=Lus10006614.BGIv1.0 annot-version=v1.0 ATGGACAAGTCCTTCACCGAAATTTGGCGGCCCGACCCATCCTTCTTCTTCCGGCCGCCGGAAACTCCTAGTGACCCCATGGAATTCCTCTCCCGATCAT GGAGTGTGTCGGCCATAGAGGTATCCAAGTCTCTAGCTCCTCCACCACCTCCTCCCCCAATGCTCCGCTCCAAGTCCTCCACCATCCAGGAAGACATCGC CGCCGAGCTTGACGAGGGCACCGCCTTTTCCGGCAACCCTTTCTCCTTTGCCTCGTCGGAGACCTCCCAGATGGTCATGGACCGTATCTTGTCTCAATCG CAAGAGGTGTCTCCAAGAACTTCTGGCAGGCTATCCCACAGCAGTGGCCCTCTCAACGGTTCCTTATCCGACAGCCCTCCGGTGTCGCCGTCGGAGATTG AGGACGTCAAGAGCACGGCAATTACTGACACATATGTCTATCATGCTGATGCTTCTCCATTTTCTTTTTTAGTTTCTCCAGAACAGAAAAGCCGTACAAT TGACAGAAATGGCGGGTGCCCAAAGGACAGGAAGGAGAAGAAGAAAGAAGAAACGAGGGCCCACAATGCTCAGGTCCACGCAGCCATCACCGTCGCCGGA GTCGCCTCCGCCATCGCGGCTATCGCGGCCGCCACTGCCGCAACTTCCGGCAAAGACGAGCAGCACGCCAAGACCGATATGGCCGTCGCCTCAGCAGCGA TCCGGGTGGGGGCCCAGGGCGTGGAAGCTGCCGAGGCCATGGGGGCGGAGCGCGACCACTTGGCCTCCGTCGTCAGCTCTGCCGTCAACGTTCGGTCTGC CGGTGACATCATGACCCTCACCGCCGCAGCAGCCACGTGTATTCAAAACATTACGCGGGGCGGCGACATTGAAGGCGAGGGCAATGAAGGATGTATGGAA TATGGCGGCGGCGATACCACTGGAGGGAGGGAGTGGGGGGNNNNNNNNNNNAGAGGTATTGGCGGCGGCGGCGGTGGCAGTGGCGGTAGTAATGGTAGCT CTTCCAGCGGCGAGCTAGTCCCTGAAGAGAATTTCCTAGGGATTTGCAGCAGAGAATTGTTAGCCAGAGGTTGTGAGCTACTCAAGCGAACTCGGAAAGG GGACCTGCACTGGAAGATAGTTTCAGTATACATCAACAAGTCGAATCAGGTTATGCTGAAGATGAAGAGTAGGCATGTTGCTGGGACCATAACCAAAAAG AAAAAGAACCTTGTGTTGGAGGTGATCAAGCATGTCCCAGCCTGGCCGGGGCGGCATCTGCTAGAGGGTGGAGAGAACCGGAGGTACTTTGGGTTGAAGA CTGTGATGCGAGGCGAGGTTGAGTTCGAATGCATGAGTCAGAAGGAATATGATCTCTGGACTGAAGGGGTATCGAGGCTTCTGGCCATATCTGCAGAAAA GAACAACAATAGACACAAAATTTGA
AA sequence Show only first row Show all	>Lus10006614 pacid=23145330 polypeptide=Lus10006614 locus=Lus10006614.g ID=Lus10006614.BGIv1.0 annot-version=v1.0 MDKSFTEIWRPDPSFFFRPPETPSDPMEFLSRSWSVSAIEVSKSLAPPPPPPPMLRSKSSTIQEDIAAELDEGTAFSGNPFSFASSETSQMVMDRILSQS QEVSPRTSGRLSHSSGPLNGSLSDSPPVSPSEIEDVKSTAITDTYVYHADASPFSFLVSPEQKSRTIDRNGGCPKDRKEKKKEETRAHNAQVHAAITVAG VASAIAAIAAATAATSGKDEQHAKTDMAVASAAIRVGAQGVEAAEAMGAERDHLASVVSSAVNVRSAGDIMTLTAAAATCIQNITRGGDIEGEGNEGCME YGGGDTTGGREWGXXXXRGIGGGGGGSGGSNGSSSSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINKSNQVMLKMKSRHVAGTITKK KKNLVLEVIKHVPAWPGRHLLEGGENRRYFGLKTVMRGEVEFECMSQKEYDLWTEGVSRLLAISAEKNNNRHKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14740			Plant protein of unknown funct...		Lus10006614 [exp]	0	1
AT4G14740			Plant protein of unknown funct...		Lus10039370 [exp]	1.7	0.8980
AT1G61600			Protein of unknown function (D...		Lus10030977 [exp]	9.0	0.8755
AT5G48060			C2 calcium/lipid-binding plant...		Lus10037479 [exp]	9.1	0.8823
AT1G71140			MATE efflux family protein (.1...		Lus10041053 [exp]	9.9	0.8195
AT1G68430			unknown protein		Lus10034103 [exp]	10.0	0.8669
AT2G46940			unknown protein		Lus10010083 [exp]	10.2	0.8379
AT1G20823			RING/U-box superfamily protein...		Lus10030728 [exp]	10.4	0.8418
AT1G68430			unknown protein		Lus10003042 [exp]	11.0	0.8621
AT1G80870			Protein kinase superfamily pro...		Lus10014361 [exp]	16.0	0.8369
AT1G11915			unknown protein		Lus10038443 [exp]	16.9	0.8352

Compare expression of checked genes

Lus10006614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.