Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14710 342 / 2e-121 ATARD2 RmlC-like cupins superfamily protein (.1.2.3.4.5) AT4G14716 332 / 2e-117 SGB3, ATARD1 suppressor of G Beta 3, acireductone dioxygenase 1 (.1) AT2G26400 313 / 1e-109 ARD, ATARD3 acireductone dioxygenase 3 (.1) AT5G43850 267 / 6e-92 ATARD4 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039375 [exp] 442 / 2e-160 AT4G14710 341 / 7e-121 RmlC-like cupins superfamily protein (.1.2.3.4.5) Lus10021902 [exp] 256 / 1e-87 AT5G43850 303 / 1e-106 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G157500 [exp] 338 / 6e-120 AT4G14710 333 / 5e-118 RmlC-like cupins superfamily protein (.1.2.3.4.5) Potri.008G157400 [exp] 256 / 1e-87 AT5G43850 308 / 2e-108 RmlC-like cupins superfamily protein (.1) Potri.010G082101 [exp] 116 / 8e-34 AT2G26400 97 / 8e-27 acireductone dioxygenase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03079 [flax] [poplar] ARD ARD/ARD' family
Representative CDS sequence Show only first row Show all	>Lus10006617 pacid=23145295 polypeptide=Lus10006617 locus=Lus10006617.g ID=Lus10006617.BGIv1.0 annot-version=v1.0 ATGCATGCTTATTTCCCTTCTGATGTTCCTTCTGAAGGATGCCTACAAGTTATTAATTGGAAGATGTACCTGCTGCAGGATACAAGAGAGGAAGGCATTC AGGCATGGTACATGGATGACAGTGATGAGGACCAGAGGTTGCCTCATCACAAGAATCCACCAGAGTATGTCTCCCTGGACAAACTTGCAGAGCTTGGAGT GCTCAGTTGGCGCTTGGATGCTGACAACTACGAAACTGATGAAGAGCTGAAGAAGATCCGTAAAGATCGTGGATATTCCTACGTGGATTTCTGCGAGGTT TGCCCTGAGAAGCTGCCAAATTATGAACAGAAAATAAAGAATTTCTTCGAGGAACATCTTCACACTGATGAGGAGATTCGTTATGCTGTTGGTGGAAGTG GCTATTTTGATGTGAGGGATCGTAATGAAAAATGGATCCGTGTGTGGGTGAAGAAAGGAGGAATGATTGTCTTACCAGCCGGCATTTACCATCGTTTTAC TCTGGATACAGACAACTACATTAAGGCTATGAGACTATTTGTGGGTGATCCTGTTTGGACACCGTTCAATCGTCCCCACGACGAGCTGCCAGCAAGGAAG GAGTATATTGAAACGTTCATCGGAGGGGGAGATGGTGCTGTTGATGCTACTGCATAA
AA sequence Show only first row Show all	>Lus10006617 pacid=23145295 polypeptide=Lus10006617 locus=Lus10006617.g ID=Lus10006617.BGIv1.0 annot-version=v1.0 MHAYFPSDVPSEGCLQVINWKMYLLQDTREEGIQAWYMDDSDEDQRLPHHKNPPEYVSLDKLAELGVLSWRLDADNYETDEELKKIRKDRGYSYVDFCEV CPEKLPNYEQKIKNFFEEHLHTDEEIRYAVGGSGYFDVRDRNEKWIRVWVKKGGMIVLPAGIYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDELPARK EYIETFIGGGDGAVDATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10006617 [exp]	0	1
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10039375 [exp]	1.0	0.9610
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	2.0	0.9559
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	3.5	0.9389
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	6.7	0.9509
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022357 [exp]	8.9	0.9339
AT5G53850			haloacid dehalogenase-like hyd...		Lus10009198 [exp]	10.5	0.9446
AT5G19930			Protein of unknown function DU...		Lus10033068 [exp]	12.7	0.9247
AT3G01360			Family of unknown function (DU...		Lus10028821 [exp]	17.3	0.9317
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	18.0	0.9322
AT5G46250			RNA-binding protein (.1.2.3)		Lus10038494 [exp]	18.5	0.9128

Compare expression of checked genes

Lus10006617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.