Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22830 350 / 1e-118 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT2G26150 270 / 4e-88 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT1G32330 275 / 5e-88 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 272 / 7e-87 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 261 / 8e-83 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 254 / 2e-80 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G51910 231 / 9e-74 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT5G43840 227 / 4e-72 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT3G63350 215 / 1e-67 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT5G03720 197 / 4e-59 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039376 [exp] 589 / 0 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000049 [exp] 410 / 3e-145 AT3G22830 124 / 1e-33 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 312 / 5e-104 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 303 / 2e-100 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10022083 [exp] 282 / 2e-92 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000312 [exp] 275 / 2e-88 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 275 / 2e-88 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10030956 [exp] 270 / 4e-86 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 263 / 1e-83 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082000 [exp] 384 / 1e-132 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 372 / 7e-128 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 334 / 6e-113 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.005G214800 [exp] 331 / 1e-111 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 275 / 1e-89 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.001G138900 [exp] 279 / 2e-89 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 278 / 3e-89 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 239 / 3e-74 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.006G148200 [exp] 228 / 8e-70 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2) Potri.006G115700 [exp] 217 / 2e-65 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10006618 pacid=23145340 polypeptide=Lus10006618 locus=Lus10006618.g ID=Lus10006618.BGIv1.0 annot-version=v1.0 ATGTTGAATCCCATAGGGCGGGGTGGTGGAGGAGGAAGGAACAGAAGCGGGAGCACCTCCTCATCGTCCACCGCTGGAGGAGGAGGAGCTCCGGTGCCTC AGCCGGTGGAGGGGCTGCACGACGTGGGTCCGCCACCGTTCCTTAGCAAGACTTATGAGATAGTGGAGGACTCCGGCACCGACGACATCGTTTCATGGAG CAGCGGCAACAACAGCTTCGTGGTGTGGGATCCTCAGGAATTTTCATTGGCTCTCCTCCCAAAGTACTTCAAGCACAACAATTTCTCCAGCTTCGTCCGC CAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCAGACAGATGGGAGTTTGCAAATGAAGGGTTTTTAAGAGGCCAAAAGCATCTCCTCAAACTCATAA GGAGGAGAAAGACTACTCAACCAACCACCCAATCCACCCTAGTAGACCCTTGTGTCGAGGTTGGCACGTTCGGATTAGAGGGCGAACTGGACCGGCTAAA AAGAGACAAACAGGTTCTGATGACGGAGCTAGTGAAGCTGAGGCAGCAGCAGCAGACCACCAAAGAATGCCTCCAGATGATGGAGCAAAGGCTGAGGCGG AATGAGGCCAAGCAGCAGCAGATGATGACTTTCCTCGCGAGAGCAGTAAAGAACCCGGACTTCTTGCAGCAGCTGGTGCATCAGAAGGGTATCATGAGGG AGCTTGAGAATGCCATCACTAAGAAAAGAAGACGGCGCCCAATTGATCAAGCACCTATTCATATTAACAATGCTGAGGCAGGAGATGATAGTTTTGTGAA GATTGAGCCTGCAGATGAGGAGGAGGAAGAGTTTGGTAGAGTGAATGGTCATGACATTGCTGAGTTGGACTCGTTGGCTCTGGACATTCAAGCTGGGCTT GGTGGATTTTCAGGAACAAGAAGCATTGAAAATTTTGAAGAGGAAGGAGGAATTGAAGTTGATCATCATGGGAGGACTTGTAAGTTTAATGATGATCATG AAGGGTACTTATGGGAACATTTAATGGATGATGATGAAATTGGGAAAACAATGGGTTTGAATATGGGAGGTGGTCATCAAGATGATAGGAATGTGGATGT GCTTTTGGAGCAGTTGGGTTTTTTTTTACCGCCTCCTTACCCCCAAACAAAAAAACGCCCTAACTTTTATTTACAAACGTCCTAA
AA sequence Show only first row Show all	>Lus10006618 pacid=23145340 polypeptide=Lus10006618 locus=Lus10006618.g ID=Lus10006618.BGIv1.0 annot-version=v1.0 MLNPIGRGGGGGRNRSGSTSSSSTAGGGGAPVPQPVEGLHDVGPPPFLSKTYEIVEDSGTDDIVSWSSGNNSFVVWDPQEFSLALLPKYFKHNNFSSFVR QLNTYGFRKVDPDRWEFANEGFLRGQKHLLKLIRRRKTTQPTTQSTLVDPCVEVGTFGLEGELDRLKRDKQVLMTELVKLRQQQQTTKECLQMMEQRLRR NEAKQQQMMTFLARAVKNPDFLQQLVHQKGIMRELENAITKKRRRRPIDQAPIHINNAEAGDDSFVKIEPADEEEEEFGRVNGHDIAELDSLALDIQAGL GGFSGTRSIENFEEEGGIEVDHHGRTCKFNDDHEGYLWEHLMDDDEIGKTMGLNMGGGHQDDRNVDVLLEQLGFFLPPPYPQTKKRPNFYLQTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	0	1
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000049 [exp]	1.4	0.9572
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	3.0	0.9527
					Lus10020157 [exp]	3.9	0.9447
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	4.4	0.9585
AT2G01900			DNAse I-like superfamily prote...		Lus10031310 [exp]	6.7	0.9476
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	6.9	0.9478
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10002961 [exp]	7.2	0.9216
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	9.5	0.9392
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	10.0	0.9502
AT5G63040			unknown protein		Lus10027687 [exp]	10.4	0.9019

Compare expression of checked genes

Lus10006618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.