Plant FIBer expression Database

Lus10006619 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04200 946 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039377
[exp]
1412 / 0 AT1G04200 993 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G081800
[exp]
1097 / 0 AT1G04200 987 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0456 Golgi_traff PF09742 Dymeclin Dyggve-Melchior-Clausen syndrome protein
Representative CDS sequence
>Lus10006619 pacid=23145312 polypeptide=Lus10006619 locus=Lus10006619.g ID=Lus10006619.BGIv1.0 annot-version=v1.0
ATGGGAGCGGCACCTTCTACCCCGGGGCGGAGTGAAGCTCGTCCGGCGGAAACAGCCGAGTATTTAGTTGGAACATTTGTCGGTGAGAAATCCTTCCCTG
TCGGTTCAGATTTCTGGCAGAAACTATTGGAGCTTCCTCTTAATCTGCGATGGCCTGCTGATCGCGTTCGTGAAGCTTGCCAGCTGTTTGCACAAAACAA
CTCTTGTACCAGGCATCTTGCGAAGATTCTTATTCACCTGGCGCAATGTTTGCAAGAGTGTATTTCAGTTTCTGGTGCACCGTCATCCACGTACCTCAAA
GCTAGCAATGCAGCTTATATTTCCTCCGTGTTTCTCAAGAACCTATTTGAAAGAGCAGAAAGCAACAATGTCGAGGAGCTGTATCTTTCACTGAATGACA
GTGAGCCTGTACCTCAAGACTTTGTAATAGATCAAAATCTGGAACGTCTTGTCATGACTAATGTTCTCAAGTTCATCAGTTTAGTAGATGTCAGTCCAAA
CACATATGGTCTTCATCATGAGTTGTTAAACTTCATGTTTGTTGCAATGTCAACTCAACTGCTGTATGGGCCAACTCCAGCCCCAACTGATATGAACCCA
TTTATTGATGCTGCAATGACTCAGGAAAATTCCTTGGTTACCTTGATCGTTCAAAGGTTGCTGCTCAATTACATAAAGCGGCCTCGTATACCGTTGAATG
TTGGATCTTATCCCCAATTTGGAGAGGCAGGTCAATCTGGGGTTCTGCAGAGAGTGGGCTCTGCTGCTGCAAATTTGGTCTTACTTCCATTCAACTATTT
GGTGAATTCAAGTGGTCAAGGTGCAAGGAACCCATTGGCAGAGTGCAGTCTCCACGTGTTACTTATTCTTAATTATTATCATAAATGCAACGTGGCAGAT
GGGTCCATAACAGATAGAAGTGATGACAGTGGAACATCAGATTCTCTTTCAAAATCAAACCTCTACTTCTCAGAGAACCCCTACTGCAAAGTTCTGGAAA
CTATGAGGGATATCGATCTTGATCGTGTTGATGTTGAAAAGAACGCACATAATGCTTCAGTCGTGAGGTTGCCGTTTGCATCACTTTTTGATACACTCGG
CATGTGCTTGGCTGATGAAACGGCAGCTTTACTGCTTTACACATTGTTGCATGGGAACTCTGATTTCTTGGAGTATGTTCTGGTGCGGACTGATGTAGAT
ACACTGTTGATGCCAATTTTAGAGACTTTATACAATGCTTCAAGGACGTCCTCTAATCATATCTACATGGTGCTGATTATACTTCTGATATTGAGTCAAG
ATTCTTCATTTAATGCGGGCATTCACAAGATGATATTGACTAGTGTTCCATGGTATCAAGAACATCTTCTCCATCAAACGTCTCTTGGTTCTTTGATGGT
GATAATTCTGATAAGGACCGTGAAGTATAATCTGTCAAAACTGAGGGATCTATACTTGCACACAACTTGCCTGGCAACTTTGGCAAACATGGCTCCTCAT
GTCCATCGTTTGAGTCCATATGCATCGCAGAGACTGGTTAGCCTCTTCTACATGCTGTCACGCAAGTACAATAAGCTTGCAGAGAGGATTGATGAGAAGA
GAGGGAAGGGTGGGTGGGTTGAAGAGAACGACCTTGCACAAGATATGTCAGCAGAACTACACATATATGCCGACTTCCTGAGGATTGTCCTTGAAATCCT
AAATGCTATTTTGACTTATGCTCTTCCTCGCAATCCGGAGGTGGTATATGCAATCATGCACAGGCAGGAGGTTTTTCAGCCTTTCAAGAGTCATCCACGC
TTCAATGAGTTGATTGAAAATATATTTATGGTTCTCGATTATTTCAATAGCCGCATCGATGCACAGAAAGAAGATGGCGAATGGTCCGTGGAGAAGGTCC
TCCAACTCATAATCAGCATTTGCCGATCATGGCGGGGTGAAGGGATGAAGATGTTCACTCAATTGCATTTCTCCTACGAGCAAGAGAGTCATCCAGAAGA
ATTCTTTACCCCATACATTTGGCGGCTAACATTTTCGCAATGTGGATTCACTTTCGATCCCAATGCCATAATCCTTTTCCCTCCTGATTTGCCTGCGATA
AAAACGGTCAGCGAGGAAGGTGAACAGAATCACAGCAATGAGAATGGAGCCACGAAACATCACACTGTTCTGCTTGATGTCTAG
AA sequence
>Lus10006619 pacid=23145312 polypeptide=Lus10006619 locus=Lus10006619.g ID=Lus10006619.BGIv1.0 annot-version=v1.0
MGAAPSTPGRSEARPAETAEYLVGTFVGEKSFPVGSDFWQKLLELPLNLRWPADRVREACQLFAQNNSCTRHLAKILIHLAQCLQECISVSGAPSSTYLK
ASNAAYISSVFLKNLFERAESNNVEELYLSLNDSEPVPQDFVIDQNLERLVMTNVLKFISLVDVSPNTYGLHHELLNFMFVAMSTQLLYGPTPAPTDMNP
FIDAAMTQENSLVTLIVQRLLLNYIKRPRIPLNVGSYPQFGEAGQSGVLQRVGSAAANLVLLPFNYLVNSSGQGARNPLAECSLHVLLILNYYHKCNVAD
GSITDRSDDSGTSDSLSKSNLYFSENPYCKVLETMRDIDLDRVDVEKNAHNASVVRLPFASLFDTLGMCLADETAALLLYTLLHGNSDFLEYVLVRTDVD
TLLMPILETLYNASRTSSNHIYMVLIILLILSQDSSFNAGIHKMILTSVPWYQEHLLHQTSLGSLMVIILIRTVKYNLSKLRDLYLHTTCLATLANMAPH
VHRLSPYASQRLVSLFYMLSRKYNKLAERIDEKRGKGGWVEENDLAQDMSAELHIYADFLRIVLEILNAILTYALPRNPEVVYAIMHRQEVFQPFKSHPR
FNELIENIFMVLDYFNSRIDAQKEDGEWSVEKVLQLIISICRSWRGEGMKMFTQLHFSYEQESHPEEFFTPYIWRLTFSQCGFTFDPNAIILFPPDLPAI
KTVSEEGEQNHSNENGATKHHTVLLDV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G04200 unknown protein Lus10006619
[exp]
0 1
AT1G04200 unknown protein Lus10039377
[exp]
1.4 0.9278
AT5G46340 RWA1 REDUCED WALL ACETYLATION 1, O-... Lus10037795
[exp]
2.0 0.9288
AT1G77610 EamA-like transporter family p... Lus10029663
[exp]
3.0 0.8750
AT1G27210 ARM repeat superfamily protein... Lus10010730
[exp]
3.2 0.9020
AT3G24715 Protein kinase superfamily pro... Lus10038159
[exp]
6.5 0.8613
AT1G19835 Plant protein of unknown funct... Lus10024325
[exp]
6.7 0.9108
AT1G04120 ATABCC5, ABCC5,... MULTIDRUG RESISTANCE PROTEIN 5... Lus10022858
[exp]
7.0 0.8815
AT3G08550 ABI8, ELD1, KOB... KOBITO, ABA INSENSITIVE 8, elo... Lus10024181
[exp]
7.3 0.8846
AT5G47490 RGPR-related (.1) Lus10004721
[exp]
8.0 0.8786
AT1G58520 RXW8 lipases;hydrolases, acting on ... Lus10004550
[exp]
8.1 0.8421

Lus10006619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.