Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22840 166 / 2e-52 ELIP1 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) AT4G14690 162 / 1e-50 ELIP2 EARLY LIGHT-INDUCIBLE PROTEIN 2, Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039378 [exp] 288 / 1e-100 AT3G22840 182 / 6e-59 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Lus10039379 [exp] 254 / 5e-87 AT4G14690 196 / 7e-64 EARLY LIGHT-INDUCIBLE PROTEIN 2, Chlorophyll A-B binding family protein (.1) Lus10006621 [exp] 252 / 4e-86 AT3G22840 194 / 3e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G158000 [exp] 171 / 2e-54 AT3G22840 192 / 6e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Potri.008G158200 [exp] 168 / 2e-53 AT3G22840 194 / 2e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Potri.008G157750 [exp] 167 / 8e-53 AT3G22840 191 / 4e-62 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Potri.008G157900 [exp] 166 / 2e-52 AT3G22840 192 / 6e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10006620 pacid=23145320 polypeptide=Lus10006620 locus=Lus10006620.g ID=Lus10006620.BGIv1.0 annot-version=v1.0 ATGGCATTGACATCTGCAACTCTCCAAACAATCTTCGCCAGCCCAGCCGCAGCTAGCCGGGCTAGATCCACCTACTTGCTTCCTCGCATTGCTTCCGTAC CCAGAATCACCAGAAATGCAGTCAGATGCATGGCCACTGGGGAAAATGAGAAAGTAAAGCCCATGGAATCAGTCTCCTCACCGCCACCACCAACTCCCAA GCCACAGCCTAAGGTGAGCACCAAGTTCGGTGACGTGTTTGCTTTCAGCGGGCCGGCGCCAGAGAGGATCAACGGCAGGCTGGCGATGATTGGTTTCGTG ACCGCTTTGGCGGTGGAGCTATCCAACGGCCAGGATGTGTTTACTCAATTATCAGCTGGAGGATCCTCTTGGTTCCTATTCATCAGCGGTCTGTTCACTG CTGCTTCGCTCGTTCCAATGTTCGAAGGTGTTACCGCTGAGTCGAAATCGGACGGGTTGATGACCTCTAACGCTGAGATCTGGAACGGTAGATTAGCTAT GATAGGTTTGGTTGCCCTCGCCGTCACCGAATATGTTAAGGGTGGACCCTTTGTGTAA
AA sequence Show only first row Show all	>Lus10006620 pacid=23145320 polypeptide=Lus10006620 locus=Lus10006620.g ID=Lus10006620.BGIv1.0 annot-version=v1.0 MALTSATLQTIFASPAAASRARSTYLLPRIASVPRITRNAVRCMATGENEKVKPMESVSSPPPPTPKPQPKVSTKFGDVFAFSGPAPERINGRLAMIGFV TALAVELSNGQDVFTQLSAGGSSWFLFISGLFTAASLVPMFEGVTAESKSDGLMTSNAEIWNGRLAMIGLVALAVTEYVKGGPFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	0	1
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10033322 [exp]	1.4	0.9260
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10039378 [exp]	1.4	0.9240
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10016003 [exp]	2.4	0.9060
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10020878 [exp]	6.3	0.8889
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006621 [exp]	7.3	0.8698
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	8.2	0.9033
AT3G52740			unknown protein		Lus10017046 [exp]	8.4	0.8944
AT3G16180			Major facilitator superfamily ...		Lus10023663 [exp]	9.2	0.8783
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10034781 [exp]	9.5	0.8834
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	11.5	0.8926

Compare expression of checked genes

Lus10006620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.