Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22840 173 / 6e-55 ELIP1 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) AT4G14690 169 / 3e-53 ELIP2 EARLY LIGHT-INDUCIBLE PROTEIN 2, Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039379 [exp] 290 / 1e-100 AT4G14690 196 / 7e-64 EARLY LIGHT-INDUCIBLE PROTEIN 2, Chlorophyll A-B binding family protein (.1) Lus10006620 [exp] 254 / 9e-87 AT3G22840 183 / 4e-59 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Lus10039378 [exp] 253 / 2e-86 AT3G22840 182 / 6e-59 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G158000 [exp] 177 / 9e-57 AT3G22840 192 / 6e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Potri.008G158200 [exp] 177 / 1e-56 AT3G22840 194 / 2e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Potri.008G157750 [exp] 177 / 2e-56 AT3G22840 191 / 4e-62 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Potri.008G157900 [exp] 176 / 4e-56 AT3G22840 192 / 6e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10006621 pacid=23145317 polypeptide=Lus10006621 locus=Lus10006621.g ID=Lus10006621.BGIv1.0 annot-version=v1.0 ATGGCATTGACATCTGCAACTCTCCAAACAATCTTCGCCAGCCCAGCCGCAGCCAGTCGGGCTAGATCCACCTACTTGCTTCCTCGCATTGCTTCCGTAC CCAGAATCACCAGAAATGCAGTGAGGTGCATGGCCACTGGGGAAGAGGAGAAAGTGAAGCCCATGGAATCCGTCTCCTCATCGTCGACACCAACACCGAC ACCACCACCAACTACTACTGCTACTTCCAAATCGATTCCAATTCCCCCAACTCCCAAGCCACAGCCCAAGGTCAGCACCAAGTTCAGGGACGTGTTCGCG TTCAGCGGGCCAGCCCCCGAGAGGATTAACGGCAGGCTGGCGATGGTTGGATTCGTGGCTGCTTTGGCGGTGGAGCTGTCCAAGGGTCAGGATGTGTTCA CTCAAATTTCAGAGGGAGGAGCCTCTTGGTTCCTATTGATTAGCGGGTTGTTCACTGTTGCTTCGCTAATTCCAATGTTCGGAGGTGTCACCGCTGAGTC GAAATCAGATGGGTTGATGACCTCCGATGCAGAGATCTGGAACGGTAGATTTGCTATGCTTGGTTTGGTTGCTCTTGCCTTCACTGAGTATGTCAAGGGC GGACCCTTTGTGTAA
AA sequence Show only first row Show all	>Lus10006621 pacid=23145317 polypeptide=Lus10006621 locus=Lus10006621.g ID=Lus10006621.BGIv1.0 annot-version=v1.0 MALTSATLQTIFASPAAASRARSTYLLPRIASVPRITRNAVRCMATGEEEKVKPMESVSSSSTPTPTPPPTTTATSKSIPIPPTPKPQPKVSTKFRDVFA FSGPAPERINGRLAMVGFVAALAVELSKGQDVFTQISEGGASWFLLISGLFTVASLIPMFGGVTAESKSDGLMTSDAEIWNGRFAMLGLVALAFTEYVKG GPFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006621 [exp]	0	1
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	3.3	0.9179
AT4G14690		ELIP2	EARLY LIGHT-INDUCIBLE PROTEIN ...		Lus10039379 [exp]	3.5	0.9112
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10022909 [exp]	4.9	0.8309
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	7.3	0.8698
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10032335 [exp]	7.5	0.8517
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030087 [exp]	13.4	0.8545
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	14.0	0.8686
AT3G47070			unknown protein		Lus10018216 [exp]	15.2	0.8572
AT1G50020			unknown protein		Lus10033758 [exp]	19.0	0.8023
AT3G43110			unknown protein		Lus10020796 [exp]	20.4	0.8211

Compare expression of checked genes

Lus10006621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.