Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34380 385 / 5e-133 5'-3' exonuclease family protein (.1.2) AT3G52050 88 / 7e-19 5'-3' exonuclease family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039380 [exp] 702 / 0 AT1G34380 402 / 1e-139 5'-3' exonuclease family protein (.1.2) Lus10025723 [exp] 77 / 6e-16 AT3G52050 307 / 2e-104 5'-3' exonuclease family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114400 [exp] 428 / 1e-149 AT1G34380 423 / 2e-148 5'-3' exonuclease family protein (.1.2) Potri.013G125700 [exp] 85 / 1e-17 AT3G52050 510 / 1e-180 5'-3' exonuclease family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF02739 [flax] [poplar] 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain CL0464 [flax] [poplar] 5_3_exonuc_C PF01367 [flax] [poplar] 5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold
Representative CDS sequence Show only first row Show all	>Lus10006622 pacid=23145315 polypeptide=Lus10006622 locus=Lus10006622.g ID=Lus10006622.BGIv1.0 annot-version=v1.0 ATGGGGCTGAATATTGTGGAAGTTTCCGCTCCCGCCGCCGTCCATCTTCCCGCTATAAAATTGTTTCCTTCTGTTTCCGTGCAATCGGGGTATCTTCGCG CTAGCAAGATACCATTGAGGCGAACTAGCGGGGTTCGTGCAGCACAGGTTTCAGCATCTCCGGCTTCTACTTGTTCCACTCCCGATGGGGCATTTTCTCG AACAGTTGGTGGGCAGTCGTCAAAGAAAGGCGACATCGGTAGGAACTCCCAAGATCCTAGCAAAAACAGCAAAAGGGTGTTCTTCTTAGACGTCAATCCT CTTTGTTACCACGAAGGCAAGCCCAGCCTGGACGCTTTTGGTCACTGGATTACCCTTTTCTTTTCTCAGGTCAGCCTTACTGATCCTGTTATTGCCGTCT TTGATGGGGAAGGCGGGTCCAAGCAACGGAGGCAGTTGCTACCTTCGTATAAAGAGCACCGGGTGAAATTTCTGGCTGATCCCTTCTCAGCGAGATCACA GAAGTCCTCAAAGGACCGCGTGGAGAGAGCTCAGGTAGTTATGGATGTACTAGCGAAATGCAACGTCCCGATAGTGAAAGTTCAGGGTCAGGAAGCGGAT GATGTTGTGGCAACTCTGGCAGAGCAAGCTCTTACTAGAGGTTACAAGGTGGTTATTGCCTCACCTGACAAGGATTTCAAGCAGCTGATTTCTGATGATG TTCAGATCGTTCAGCCTGTTACTGACCTGAAAAGATGGTCTTTTTATACCATGAAGCATTACTTGGCTCAGTACAATTGCGACCCGTGCTCTGATCTGAG CTTTAGGTGCATCGTTGGTGATGAAGTTGACGGTGTTCCTGGGTTACAAACTGTAGCCCCTTCCTTTGGTCGCAAGACTGCTCTAAAGCTCTTGAAGAAA CACGGGTCCTTGGAGAACTTACTGAATGCAGCAGCAGTAAGGACTGTGGGGAAACCGTATATACAAGATGCCCTCATACAGAATGCCGATTACCTGCGGA GGAACTATCAAGTTCTTGCCCTGAGGAAAGATGTTGATGTTCTTCTTCAAGATGATTGGTTGGTTCAAAGAGATCGAGTTCACGATTCCAATGCTCTGGC CGACTTCTTCAAGTTATTGGCGCAAAAGCATTTATCAGAAACGGCATTGACGCAAAAGCGCAGAGGCTACACAAAGAAATGA
AA sequence Show only first row Show all	>Lus10006622 pacid=23145315 polypeptide=Lus10006622 locus=Lus10006622.g ID=Lus10006622.BGIv1.0 annot-version=v1.0 MGLNIVEVSAPAAVHLPAIKLFPSVSVQSGYLRASKIPLRRTSGVRAAQVSASPASTCSTPDGAFSRTVGGQSSKKGDIGRNSQDPSKNSKRVFFLDVNP LCYHEGKPSLDAFGHWITLFFSQVSLTDPVIAVFDGEGGSKQRRQLLPSYKEHRVKFLADPFSARSQKSSKDRVERAQVVMDVLAKCNVPIVKVQGQEAD DVVATLAEQALTRGYKVVIASPDKDFKQLISDDVQIVQPVTDLKRWSFYTMKHYLAQYNCDPCSDLSFRCIVGDEVDGVPGLQTVAPSFGRKTALKLLKK HGSLENLLNAAAVRTVGKPYIQDALIQNADYLRRNYQVLALRKDVDVLLQDDWLVQRDRVHDSNALADFFKLLAQKHLSETALTQKRRGYTKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34380			5'-3' exonuclease family prote...		Lus10006622 [exp]	0	1
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	10.6	0.7622
AT3G27520			unknown protein		Lus10003664 [exp]	10.6	0.7366
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10018062 [exp]	13.3	0.7404
AT4G27460			Cystathionine beta-synthase (C...		Lus10025651 [exp]	25.5	0.6748
AT2G35390			Phosphoribosyltransferase fami...		Lus10040098 [exp]	27.4	0.7570
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	35.4	0.7528
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10018172 [exp]	36.6	0.7534
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	40.1	0.7180
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10010998 [exp]	42.4	0.6794
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10029436 [exp]	48.1	0.7407

Compare expression of checked genes

Lus10006622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.