Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22845 324 / 6e-114 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G07680 109 / 1e-29 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 71 / 4e-15 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G09580 71 / 6e-15 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 60 / 7e-11 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 56 / 1e-09 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 54 / 7e-09 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G69460 52 / 3e-08 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 52 / 4e-08 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G26690 46 / 4e-06 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039381 [exp] 392 / 4e-141 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041182 [exp] 370 / 2e-132 AT3G22845 350 / 2e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10021900 [exp] 367 / 3e-131 AT3G22845 348 / 9e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10035821 [exp] 110 / 3e-30 AT3G07680 254 / 1e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036603 [exp] 109 / 9e-30 AT3G07680 259 / 9e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022525 [exp] 108 / 2e-29 AT3G07680 320 / 1e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10016624 [exp] 108 / 2e-29 AT3G07680 320 / 2e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10032588 [exp] 107 / 8e-29 AT3G07680 305 / 3e-106 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10043160 [exp] 108 / 2e-27 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081700 [exp] 336 / 8e-119 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G369000 [exp] 108 / 4e-29 AT3G07680 315 / 2e-110 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.003G019300 [exp] 64 / 3e-12 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G210900 [exp] 63 / 4e-12 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 62 / 1e-11 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 61 / 2e-11 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 57 / 7e-10 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 51 / 6e-08 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G164600 [exp] 50 / 2e-07 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10006623 pacid=23145305 polypeptide=Lus10006623 locus=Lus10006623.g ID=Lus10006623.BGIv1.0 annot-version=v1.0 ATGGAGATGAAACAGATCTACGTTGCGGCAGCGCTTTTGTTGAGCTTCGTCGGCCGAATCTCTTCCCTATCCATCACCGTCAACGAGGTCGAATGCGTGT ACGAGTATGTTTTCTACGAGGGAGACTCCATCTCCGGTAACTTCGTCGTCGTCGATCATGATATATTCTGGAGCTCCGATCACCCTGGCATCGATTTCTC TGTAACATCTCCTGGAGGGAACGTCGTGAAAGACATAAAAGGGACATCTGGAGATAAGTTCGAGCTTAAAGCTCCGAGAAGTGGGATGTACAAGTTTTGT TTTCACAATCCCGTTTCTACACCTGAGACTGTGTCGTTCTACATTCACGTGGGCCACATTCCGAATCAGTTTGATGTTGCAAAAGATGAACATTTGGACC CCGTCAATGTTAAAATTGCTGAGCTCAGAGAGGCATTGGAATCGGTTACAGCAGAGCAGAAGTACCTGAGAGCACGTGACAATAGACACCGCCACACAAA TGAAAGCACGAGAAGGCGTGTTATAGGCTACACGGTTGGAGAATACATTTTACTAGCTGCCGTGAGCTCACTCCAGGTGCTATATATCCGTCGCCTCTTC AACAAGTCGGTGGCTTACAACCGTGTCTGA
AA sequence Show only first row Show all	>Lus10006623 pacid=23145305 polypeptide=Lus10006623 locus=Lus10006623.g ID=Lus10006623.BGIv1.0 annot-version=v1.0 MEMKQIYVAAALLLSFVGRISSLSITVNEVECVYEYVFYEGDSISGNFVVVDHDIFWSSDHPGIDFSVTSPGGNVVKDIKGTSGDKFELKAPRSGMYKFC FHNPVSTPETVSFYIHVGHIPNQFDVAKDEHLDPVNVKIAELREALESVTAEQKYLRARDNRHRHTNESTRRRVIGYTVGEYILLAAVSSLQVLYIRRLF NKSVAYNRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10006623 [exp]	0	1
					Lus10020449 [exp]	12.6	0.6327
AT5G25360			unknown protein		Lus10002164 [exp]	14.9	0.6974
AT1G20540			Transducin/WD40 repeat-like su...		Lus10034576 [exp]	16.2	0.6787
AT4G17486			PPPDE putative thiol peptidase...		Lus10019437 [exp]	27.3	0.6975
AT3G06070			unknown protein		Lus10010508 [exp]	28.4	0.7106
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10039413 [exp]	30.0	0.6759
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031323 [exp]	31.5	0.6505
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030890 [exp]	34.0	0.6502
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10021246 [exp]	41.8	0.6586
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10026274 [exp]	48.8	0.6580

Compare expression of checked genes

Lus10006623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.