Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26850 702 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 629 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 569 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 563 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 557 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 551 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 474 / 1e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 412 / 1e-138 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 411 / 3e-138 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 393 / 2e-131 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039385 [exp] 917 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 721 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 716 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 714 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 713 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10008619 [exp] 691 / 0 AT1G26850 727 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10042197 [exp] 677 / 0 AT1G26850 706 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011045 [exp] 659 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 657 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069000 [exp] 766 / 0 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G094100 [exp] 716 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G147800 [exp] 711 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G087600 [exp] 672 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 668 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 574 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 572 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 565 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 565 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 564 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10006626 pacid=23145322 polypeptide=Lus10006626 locus=Lus10006626.g ID=Lus10006626.BGIv1.0 annot-version=v1.0 ATGGCGACGAAAGGAAACTCAGGGGACACTAGAACTAGGAGCTCCATTTCAATATTCATTGTGGTCGGTTTATGTTTCTTCTTCTACATCTTGGGTGCGT GGCAGCGGAGTGGGTTTGGGAAGGGTGATACTATTGCTCTGGAGAACTGGATCATATATGAGGGGAACGTGTTTAGGTTTCCAGGGGGTGGAACACAGTT CCCCCATGGAGCAGATACCTATATCGATCAGCTTGCTTCAGCAATCCCGATCGATAATGGGATGGTTAGAACTGCCTTGGATACTGGATGTGGGGTTGCT AGTTTGGGTGCATACCTTTTCAAGAAGAATGTCCTGACAATGTCATTTGCACCAAGAGACTCTCATGAAGCACAAGTTCAGTTTGCCCTTGAAAGAGGTG TGCCAGCTGTCATCGGTATTCTTGGAACTATCAAGATGCCATATCCTTCCGGAGCCTTTGACATGGCTCACTGTTCTCGTTGCCTGATTCCATGGGGTGG TAATGATGGAATGTACATGATGGAAGTCGATCGTGTTCTCAGACCAGGTGGTTACTGGCTGCTTTCTGGTCCTCCCATCAACTGGAGGACTCATTATGAA GCATGGAATAGAACTAACGAGAATCTTGAAGCAGAACAAAAAAAAATTGAGGAAATTGCTCGGCTTCTTTGCTGGGAAAAGAAAAATGAGTTGGGTGATA TAGCTATCTGGCAAAAAAGATTGAACCCTGATTCTTGCAATGAGCAACGCACCATGTGTGAATCCTCAAATCCTGATGATGTCTGGTACAAAAAATTGGA GCCCTGTGTAACTCGTACCCCAAAGACTGATGGATATGAATGGAAGCCATTTCCTGAAAGACTCAATGCCGTACCTTTCAGAATCACTAGTGGAGCTATT CCTGGAGTGTCTCCAGGGAAATTCTTGGAGGACAATAGGAGCTGGAAGAAGCATGTGAATGCTTATAAGCGGATAAACAAGATTCTAGACACAGGGAGGT ACCGCAACATTATGGACATGAATGCTGGTTTGGGAGGTTTTGCAGCAGCCCTTGAATCTCCTAAACTATGGGTTATGAATGTTATGCCTACAATTGCTGA GAAGAACACATTGGGTGCTATCTATGAGCGTGGGTTGATTGGCATATATCATGATTGGTGTGAAGCTTTCTCTACGTATCCAAGAACTTATGACCTCATT CACGCAGATGGCATCTTCAGCTTGTACAAGGACAAGTGCAGCATGGAAGACATTCTCCTGGAAATGGACAGGATATTAAGGCCTGAAGGAACAGTCATAT TCCGCGATCATGTGGATGTTCTTGTCAAAGTGAAGAGAACTGTGTCGGGGATGAGATGGAATACGAAAATGGTTGACCACGAAGATGGTCCACTCGTTCC GGAGAAGGTGATGTTTGCTGTTAAACAATACTGGGTTGCAGGAGAACATAATGCTACTTTCAATAATTAA
AA sequence Show only first row Show all	>Lus10006626 pacid=23145322 polypeptide=Lus10006626 locus=Lus10006626.g ID=Lus10006626.BGIv1.0 annot-version=v1.0 MATKGNSGDTRTRSSISIFIVVGLCFFFYILGAWQRSGFGKGDTIALENWIIYEGNVFRFPGGGTQFPHGADTYIDQLASAIPIDNGMVRTALDTGCGVA SLGAYLFKKNVLTMSFAPRDSHEAQVQFALERGVPAVIGILGTIKMPYPSGAFDMAHCSRCLIPWGGNDGMYMMEVDRVLRPGGYWLLSGPPINWRTHYE AWNRTNENLEAEQKKIEEIARLLCWEKKNELGDIAIWQKRLNPDSCNEQRTMCESSNPDDVWYKKLEPCVTRTPKTDGYEWKPFPERLNAVPFRITSGAI PGVSPGKFLEDNRSWKKHVNAYKRINKILDTGRYRNIMDMNAGLGGFAAALESPKLWVMNVMPTIAEKNTLGAIYERGLIGIYHDWCEAFSTYPRTYDLI HADGIFSLYKDKCSMEDILLEMDRILRPEGTVIFRDHVDVLVKVKRTVSGMRWNTKMVDHEDGPLVPEKVMFAVKQYWVAGEHNATFNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10006626 [exp]	0	1
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10009930 [exp]	5.3	0.8618
AT2G28780			unknown protein		Lus10040846 [exp]	6.8	0.8231
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10015027 [exp]	10.8	0.8634
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Lus10008061 [exp]	12.5	0.8257
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	24.8	0.8587
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	24.9	0.8388
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10000973 [exp]	25.7	0.8535
AT5G15400			U-box domain-containing protei...		Lus10005222 [exp]	27.7	0.8172
AT1G48900			Signal recognition particle, S...		Lus10016213 [exp]	32.4	0.8579
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10028321 [exp]	34.4	0.8571

Compare expression of checked genes

Lus10006626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.