Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43810 1651 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G48410 1416 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT2G27880 1018 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 582 / 0 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT5G21150 498 / 2e-161 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 497 / 1e-160 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 459 / 1e-146 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21030 446 / 4e-142 PAZ domain-containing protein / piwi domain-containing protein (.1) AT1G31280 451 / 5e-142 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 429 / 2e-132 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039386 [exp] 1813 / 0 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10031331 [exp] 1454 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10017983 [exp] 1413 / 0 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 1402 / 0 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031904 [exp] 1329 / 0 AT1G48410 1481 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10014386 [exp] 736 / 0 AT2G27880 773 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Lus10036794 [exp] 607 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10037136 [exp] 603 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 600 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G158800 [exp] 1758 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.010G081300 [exp] 1738 / 0 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.015G029000 [exp] 1459 / 0 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.012G037100 [exp] 1454 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.009G001500 [exp] 1099 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.001G213700 [exp] 1084 / 0 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.006G118600 [exp] 1012 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.010G163800 [exp] 607 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.008G010500 [exp] 510 / 9e-166 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 501 / 5e-162 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10006627 pacid=23145326 polypeptide=Lus10006627 locus=Lus10006627.g ID=Lus10006627.BGIv1.0 annot-version=v1.0 ATGCCTATAGGGCAGCTGAAAGAAAGCTCGGCACAGCACTTTGTGATCAAATCCCAGCTTCAGAACAACAACACAGCCAACAGGCCTAGAAAACACCACA CGCCTGCTGCACAGAGCGGGAAAGGGACAGCACCACAACCACCATCATCCCAAGAAACACATAATGCTGCTAAACCTCAAAACCAGAATCAGAATCAGAC CTCGTCAGCCTCGCCTCCTGCCGGAAAGAGCAAAGGCAGAAGGAGAGGGAGAGGTGGCCGGAAATCTGATCAATCTGATGCCTTTATGAGACCAAGCTCA AGGCCTTGCACTGTAGCTCACAAACCTGTCAATGGACAAGGAGATGGTGGGTCCCTTCCAAATGGGTCACTTGAAAATGGTGGTGGATCTCATTTTGAGA TGGTAACGGCTCATTTGGCTTTTCCTACCTCTAGCAAGTCTATGGTTTTTGCTCAAAGGCCTGGCTTTGGTCAGCTTGGGACAAAGTGTGTTGTCAAGGC CAACCACTTCTTTTCGGAGTTGCCCAACAAAGATTTGAATCAGTATGATGTTACTATTACTCCGGAGGTTGCATCAAGGAGCATCAACAGAGCTATTATG GCAGAGCTTGTGAAACGCCACAGAGAATCTGACTTAGGAATGAGACTTCCTGCTTACGATGGCAGGAAGAGTCTTTACACTGCTGGTGAACTTCCCTTTG CTTGGAAGGAGTTCACCATTAAACTTATTGATGACGAGGATGGTATCAATGGTCCCAAGAGGGAAAGAGAATTCAAAGTTGCCCTTAAGTTTGTTGCAAG GGCCAATATGTACCACTTAGGGCAATTTTTGGCTGGTAAACGTGCTGATGCTCCTCAAGAAGCTCTAAAAATCCTTGACATTGTGCTGAGAGAGCTCTCC ACCAAAAGGTACTGTCCCGTAGGAAGGTCCTTCTTTTCACCTGATATTAGAGCGCCACAAAGATTGGGTGAGGGCTTGGAGTCATGGTGTGGATTTTATC AGAGTATAAGGCCCACCCAAATGGGACTTTCCCTGAATATTGATATGGCTTCTGCTGCATTTATTGAGCCTCTTCCCGTGGTTGAGTACGTAGCTCAGCT TCTTGGTAAAGATGTGTTGTCAAGGCCATTGTCTGATTCTGACCGTGTGAAGATTAAAAAGGCTTTTAGAGGGGTAAAAGTTGAAGTAACTCATAGAGGG CATGTACGACGGAAGTATCGTGTCTCAGGATTAACAGCTCAACCCACAAGAGAGCTTGTGTTCCCTGTTGATGAAAACGCGACCATGAAATCAGTGGTTG AGTATTTCCAAGAGATGTATGGCTTCACCATTCAACATACACACCTCCCCTGTCTTACAGTGGGAAACCAGAAGAAGGCAAACTACCTTCCCATGGAGGC ATGCAAAATTGTGGAGGGGCAGCGGTACTCGAAAAGGTTGAATGAGAAACAAATTACTGCCCTGCTTAAAGTTACATGTCAAAGGCCTAGGGATCGGGAA AATGACATTTTGCAGACAGTTCAACAAAATGCATATGATCAAGACCCTTATGCAAAGGAGTTTGGACTTAATATAAGTGAAAAGCTAGCATCTGTCGAGG CTCGAATTCTTCCTGCTCCATGGCTAAAATACCATGAAACAGGAAAGGAAAAGGACTGTTTACCTCAAGTTGGTCAATGGAATATGATGAACAAGAAAAT GATTAACGGAATGACTGTAAATCGATGGGCTTGTATTAACTTCTCCAGGAGTGTGCAAGAAAGTGTTGCTCGTGGATTTTGCAGCGAACTTGGTCAAATG TGCCAAGTCTCTGGCATGGAATTCAATCCAGACCCTGTCATTCCTATATACACTGCTAGGCCTGATCAAGTAGAAAAAGCCTTGAAACATGTTTACAATG CATCAATGAACAAGTCCAAGGGGAAAGAACTGGAGCTGCTTTTAGCCATTCTGCCGGACAACAATGGTTCCTTGTATGGTGATCTCAAGCGCATATGTGA AACTGATCTTGGTATAATTTCGCAATGCTGTCTCACAAAGCATGTATTCAAGATAAGCAAGCAGTACTTGGCTAATGTTTCCTTAAAGATCAATGTCAAG ATGGGTGGAAGAAACACTGTCCTGTTAGATGCTATCAGCTGCAAAATACCATTAGTGAGTGACATACCAACCATAATATTTGGTGCAGATGTGACACACC CAGAGAACGGAGAGGATTCAAGCCCTTCAATTGCAGCTGTGGTAGCTTCTCAGGACTGGCCCGAGGTCACAAAATATGCTGGATTAGTCTGTGCTCAAGC TCACAGGCAAGAACTCATCCAAGATCTTTATAAAACATGGCAAGATCCTGTCCGTGGTACCATGAGTGGCGGTATGATCAGAGATCTTCTTATTTCCTTT AGGAAGGCAACAGGACAGAAGCCGCTACGAATAATATTCTACAGAGATGGAGTTAGTGAAGGACAATTTTATCAGGTCTTGCTTTACGAGTTGGATGCAA TCCGGAAGGCATGCGCTTCCCTAGAGCCAAACTATCAGCCACTAGTGACTTTCATTGTTGTACAAAAACGGCATCACACTCGATTGTTTGCAAACAATCA CAGGGACAGGAACAGCACAGATAAAAGTGGGAATGTACTGCCTGGCACAGTCGTGGATACAAAAATCTGTCACCCAAGCGAATTCGACTTCTATCTTTGT AGTCACGCCGGAATCCAGGGGACTAGCCGGCCAGCTCACTACCATGTGCTATGGGATGAGAACAACTTCACAGCTGATGGAATCCAATCCTTAACAAACA ATCTGTGTTACACCTATGCAAGATGCACCCGTTCTGTATCTGTTGTTCCCCCGGCGTATTATGCACATCTGGCAGCCTTCCGTGCTCGGTTCTACCTGGA ACCACAGATGCAAGATAATGGATCATCGACATGTGGCAAGGATACAAGGCTTCTGGGAGAAGCTGGTGTTCGACCATTGCCAGCGTTGAAGGAGAATGTG AAAAGGGTGATGTTCTACTGTTGA
AA sequence Show only first row Show all	>Lus10006627 pacid=23145326 polypeptide=Lus10006627 locus=Lus10006627.g ID=Lus10006627.BGIv1.0 annot-version=v1.0 MPIGQLKESSAQHFVIKSQLQNNNTANRPRKHHTPAAQSGKGTAPQPPSSQETHNAAKPQNQNQNQTSSASPPAGKSKGRRRGRGGRKSDQSDAFMRPSS RPCTVAHKPVNGQGDGGSLPNGSLENGGGSHFEMVTAHLAFPTSSKSMVFAQRPGFGQLGTKCVVKANHFFSELPNKDLNQYDVTITPEVASRSINRAIM AELVKRHRESDLGMRLPAYDGRKSLYTAGELPFAWKEFTIKLIDDEDGINGPKREREFKVALKFVARANMYHLGQFLAGKRADAPQEALKILDIVLRELS TKRYCPVGRSFFSPDIRAPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEYVAQLLGKDVLSRPLSDSDRVKIKKAFRGVKVEVTHRG HVRRKYRVSGLTAQPTRELVFPVDENATMKSVVEYFQEMYGFTIQHTHLPCLTVGNQKKANYLPMEACKIVEGQRYSKRLNEKQITALLKVTCQRPRDRE NDILQTVQQNAYDQDPYAKEFGLNISEKLASVEARILPAPWLKYHETGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCSELGQM CQVSGMEFNPDPVIPIYTARPDQVEKALKHVYNASMNKSKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVK MGGRNTVLLDAISCKIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTMSGGMIRDLLISF RKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPLVTFIVVQKRHHTRLFANNHRDRNSTDKSGNVLPGTVVDTKICHPSEFDFYLC SHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYLEPQMQDNGSSTCGKDTRLLGEAGVRPLPALKENV KRVMFYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10006627 [exp]	0	1
AT3G22790			Kinase interacting (KIP1-like)...		Lus10039359 [exp]	6.0	0.8636
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	6.5	0.8632
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	6.9	0.9031
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10018698 [exp]	8.4	0.8558
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	10.8	0.8758
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10037946 [exp]	13.8	0.8667
AT3G48970			Heavy metal transport/detoxifi...		Lus10027470 [exp]	18.4	0.8503
AT4G36090			oxidoreductase, 2OG-Fe(II) oxy...		Lus10028671 [exp]	18.6	0.8410
AT2G45340			Leucine-rich repeat protein ki...		Lus10030279 [exp]	18.7	0.8367
AT2G46980			unknown protein		Lus10038019 [exp]	20.7	0.8709

Compare expression of checked genes

Lus10006627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.