Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21065 386 / 5e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G48910 369 / 1e-122 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 365 / 4e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 364 / 5e-120 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 356 / 6e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 353 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 351 / 5e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 343 / 4e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 343 / 4e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 343 / 5e-111 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039388 [exp] 710 / 0 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000117 [exp] 706 / 0 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010909 [exp] 374 / 2e-124 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 370 / 5e-123 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 368 / 1e-122 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 364 / 6e-120 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 359 / 6e-119 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 361 / 1e-118 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 355 / 4e-118 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031600 [exp] 388 / 4e-129 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 384 / 1e-128 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G065500 [exp] 379 / 2e-127 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G252400 [exp] 374 / 5e-127 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G105700 [exp] 379 / 3e-126 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 375 / 2e-123 AT3G22690 582 / 0.0 unknown protein Potri.005G012600 [exp] 370 / 5e-123 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 370 / 9e-123 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 370 / 1e-122 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 372 / 2e-122 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006628 pacid=23145321 polypeptide=Lus10006628 locus=Lus10006628.g ID=Lus10006628.BGIv1.0 annot-version=v1.0 ATGCAGAAGAATTCTTCTATCAGACCGAACGAAGTTACGCTTGTGGCTGTGATTAGTGCCTGTTCTAATTTGGGTGCTCTAAGTCAAGGTGCTTGGGCAC ATTTGCTTGCGCTGAAGACCGGTCTTAAGCTAAATCGTTTTGTGGGCACTGCTTTGGTAGATTTATATTCTAAAAGTGGGCGAGTGGATCTTGCACGCAA GATGTTTGATCAATTGGCTCAAAGGGATATACTTTGCTACAATGCCATGATTGGAGGCTTGGCAATTCATGGTTATGGCTTGCAGGCTCTTGGCTTATAC GAGAAAATGGAGCTTGAGTGCCTTGCTCCCGATTCGGTAACGTTCATAGTTACAATGAGTGCTTGCTCACATAGCGGTTTAGTAGAGCAGGGCCATAAGA TTTTCGAGTCTATAAAAGAGGTTCATGGGATTGAACCAACAGTTAAGCACTATGGATGTGTAGTTGATCTTCTGATTCGTGCCGGCCGACTTAAAGAGGC TGAGGAAAAGGTTAGAAGCATGCCAATGAGTCCAAATGCAGCTGTATGGAGGTCACTACTGGCTGGAGCTAGAATTCATGGAGACTTACAGTTTGGTGAA ACGGCACTTAAACAGCTTGTGCAATTAGAGCCAGAGAAGAGTGGTAGTTACGTTCTTTTATCAAACATGTATGCCTCTACCCACAAATGGGAAGAAGTGA AGAGAGTTAGAGAAGTAATGAAAGAGGAAGGGATCGTCAAATTTCCTGGCAGCTCCATAGTGGAGATCGGCGGAGCTATGCACGAGTTCATAACTGGAGA CAGAACTCATCCACTTTCCAATTACATCTACTCCAAGGTTGAAGAGATGAGCACCAAGTTGCAAGAACACGGTCACAAGCCAAGAACAAGGGAAGTATTG TTTGAAATAGAGGATGAAGAGAAAGAAGATGCTCTTTCGTACCACAGCGAAAGGCTGGCGATTGCATTCGCTCTGTTGGTGGCTGCAGATTCGGACAACG TCGATGCTCCAGTAAGAATAATAAAGAACCTTCGGGTTTGTGGGGATTGCCACGACAGTTTTAAGCTCATTTCTGTGATTTACAAGAGAGAAATTATAGT GAGGGACCGAGGTAGGTTTCATCATTTCAGAGATGGGAGATGTTCTTGTTTGGATTACTGGTAA
AA sequence Show only first row Show all	>Lus10006628 pacid=23145321 polypeptide=Lus10006628 locus=Lus10006628.g ID=Lus10006628.BGIv1.0 annot-version=v1.0 MQKNSSIRPNEVTLVAVISACSNLGALSQGAWAHLLALKTGLKLNRFVGTALVDLYSKSGRVDLARKMFDQLAQRDILCYNAMIGGLAIHGYGLQALGLY EKMELECLAPDSVTFIVTMSACSHSGLVEQGHKIFESIKEVHGIEPTVKHYGCVVDLLIRAGRLKEAEEKVRSMPMSPNAAVWRSLLAGARIHGDLQFGE TALKQLVQLEPEKSGSYVLLSNMYASTHKWEEVKRVREVMKEEGIVKFPGSSIVEIGGAMHEFITGDRTHPLSNYIYSKVEEMSTKLQEHGHKPRTREVL FEIEDEEKEDALSYHSERLAIAFALLVAADSDNVDAPVRIIKNLRVCGDCHDSFKLISVIYKREIIVRDRGRFHHFRDGRCSCLDYW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	0	1
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	1.4	0.8057
AT3G47530			Pentatricopeptide repeat (PPR)...		Lus10000274 [exp]	1.7	0.7821
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	3.7	0.7748
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	4.5	0.7795
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	4.5	0.7462
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	4.9	0.7991
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028837 [exp]	5.7	0.7380
AT4G02210			unknown protein		Lus10010304 [exp]	16.9	0.6308
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	18.3	0.7294
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	18.3	0.7091

Compare expression of checked genes

Lus10006628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.