Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22890 769 / 0 APS1 ATP sulfurylase 1 (.1) AT4G14680 764 / 0 APS3 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT5G43780 726 / 0 APS4 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT1G19920 676 / 0 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039389 [exp] 817 / 0 AT4G14680 655 / 0.0 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Lus10034513 [exp] 675 / 0 AT1G19920 744 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Lus10033158 [exp] 672 / 0 AT1G19920 736 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G159000 [exp] 825 / 0 AT3G22890 767 / 0.0 ATP sulfurylase 1 (.1) Potri.010G081200 [exp] 815 / 0 AT3G22890 758 / 0.0 ATP sulfurylase 1 (.1) Potri.002G024200 [exp] 655 / 0 AT1G19920 758 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Potri.005G237300 [exp] 644 / 0 AT1G19920 734 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01747 [flax] [poplar] ATP-sulfurylase ATP-sulfurylase
Representative CDS sequence Show only first row Show all	>Lus10006629 pacid=23145332 polypeptide=Lus10006629 locus=Lus10006629.g ID=Lus10006629.BGIv1.0 annot-version=v1.0 ATGGCGTCAATGTCGACTCTTTTCGCTCAAACTCACTGCCCTATCCGCTCTCTTCCCAAATCATTCACCACCCAGCTGGCTCCACCCGTCAAAGTTTCCT TCTCGGCCAAAAACCGGAGCAGCAGCGCCGTCCGGGTCAGGGCTGCGTTGATCGACCCGGACGGTGGGAAGCTGGTGGAGCTATTCGTCGACAAGACCCA GAGGGATGTGCGACGGAATGAGGCGACTGCTCTGCCGAAGGTGAAGCTTACGAGCATCGACGTTCAGTGGGTCCACGTGCTGAGCGAAGGTTGGGCAAGT CCCCTACGCGGGTTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTCAACTCGCTCCGTCTCCAGGACGGATCGGTTGTAAACATGTCGGTACCCA TCGTACTGGCAATCGACGATCTGCAGAAGCAGCGCATCGCCGAATCCAATAGGGTCGCCCTTGTTGACTCTAACGACAACACTATCGCAATCCTCAACGA CATTGAGATATACAAGCACCCTAAGGAAGAAAGGATAGCAAGAACATGGGGAACCACTGCTCCTGGTTTACCATACGTTGAGGAAGCCATTACCGGTTCA GGGAACTGGCTGATTGGAGGTGACCTAGAGGTTATAGAGCCAATTAAGTACCATGATGGCCTCGATAGGTTTCGGTTGTCACCAGCTGAGCTCCGCGAGG AATTCGAGAGGAGGAATGCAGATGCTGTGTTTGCATTCCAGCTGAGGAACCCTGTGCACAATGGCCATGCTTTGTTGATGACCGATACTCGTAAGAGGCT ACTTGACATGGGTTATAAGAACCCTGTTCTTTTGCTCCATCCACTTGGAGGCTACACCAAGGCTGATGATGTTCCGCTCACTTGGCGGATGAAGCAACAT GAAAAGGTACTTGAGGATGGTGTTCTTGATCCCGAGACAACTGTGGTTTCGATATTCCCATCCCCAATGCACTACGCTGGTCCAACTGAGGTGCAGTGGC ACGCGAAAGCTCGTATCAATGCAGGGGCTAACTTCTACATTGTGGGAAGGGACCCAGCTGGAATGGGCCACCCTGTTGAGAAGAGGGATCTTTACGATGC TGACCACGGAAAGAAGGTGTTGAGTATGTCTCCTGGACTCGAGCGCCTGAATATACTTCCTTTCAAGGTTGCTGCATATGACAAGACTCAGGGTAAAATG GCATTCTTTGACCCCTCAAGGGCTCAGGACTTCGTCTTCATATCTGGCACCAAGATGAGAGCGCTTGCAAAGAGCGGAGAGAACCCTCCTGATGGATTCA TGTGCCCCGGCGGGTGGAAAGTTCTGGTGGAATACTACGACAGCCTGACCCCAACACGGAATGGCAAGGTCCCTGAACCAGTTCCAGCCTAG
AA sequence Show only first row Show all	>Lus10006629 pacid=23145332 polypeptide=Lus10006629 locus=Lus10006629.g ID=Lus10006629.BGIv1.0 annot-version=v1.0 MASMSTLFAQTHCPIRSLPKSFTTQLAPPVKVSFSAKNRSSSAVRVRAALIDPDGGKLVELFVDKTQRDVRRNEATALPKVKLTSIDVQWVHVLSEGWAS PLRGFMRESEFLQTLHFNSLRLQDGSVVNMSVPIVLAIDDLQKQRIAESNRVALVDSNDNTIAILNDIEIYKHPKEERIARTWGTTAPGLPYVEEAITGS GNWLIGGDLEVIEPIKYHDGLDRFRLSPAELREEFERRNADAVFAFQLRNPVHNGHALLMTDTRKRLLDMGYKNPVLLLHPLGGYTKADDVPLTWRMKQH EKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMSPGLERLNILPFKVAAYDKTQGKM AFFDPSRAQDFVFISGTKMRALAKSGENPPDGFMCPGGWKVLVEYYDSLTPTRNGKVPEPVPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Lus10006629 [exp]	0	1
AT4G14680		APS3	Pseudouridine synthase/archaeo...		Lus10039389 [exp]	1.7	0.9386
AT5G04590		SIR	sulfite reductase (.1)		Lus10009951 [exp]	3.2	0.8980
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	8.8	0.9253
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039505 [exp]	10.4	0.9121
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039745 [exp]	18.2	0.9174
AT3G04200			RmlC-like cupins superfamily p...		Lus10006549 [exp]	18.7	0.8415
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	19.7	0.9112
AT5G38960			RmlC-like cupins superfamily p...		Lus10006550 [exp]	20.6	0.8423
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Lus10020040 [exp]	21.2	0.8255
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10011958 [exp]	22.2	0.8921

Compare expression of checked genes

Lus10006629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.