Plant FIBer expression Database

Lus10006630 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G082800
[exp]
47 / 1e-06 AT4G19550 65 / 1e-12 zinc ion binding;transcription regulators (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07741 BRF1 Brf1-like TBP-binding domain
Representative CDS sequence
>Lus10006630 pacid=23145306 polypeptide=Lus10006630 locus=Lus10006630.g ID=Lus10006630.BGIv1.0 annot-version=v1.0
ATGTCTACGGATCGGGAATCCACAGGTAGCGGAGACGAAGAAGATTTGAGCGACATGGATGATAATGAGATATCCAGTTGCCTGAACGACGAAAGGCAAG
TGGAACTGAAGTCGAAGATCTGGGAACTGATGCACGGTCAATACTTGAAGAGGAAGCGAGAATTTGATAACCTACCGCCAGACGCCAGGAAGAAGCTTAA
AGCTGCCGATGCCCGCAAATCCGAGAAAACCGGCCCAGACGGTAGCGGTGACAAAGAAAAGGAAGAGAAGGAGAAGGAGCAGAATAAGAAGAAGGCGAGA
GAGGCGTCATTGAGTTCCAAGATCAATTTCGACGCGTTTAAGAAATTATTTGGTGAGAACGATGGAGAAAACGATGGTAAGGCTGCAGAGAACAACGAGG
AGAGTGAGAAGCTTGAAGAAAACAATGACGGCGGCGAAGATTGTTATTTTAACGAAGAAGAGGAGTACGAGAGCGATCGCAATTCTGAATATGTTGATTA
TTGGTGA
AA sequence
>Lus10006630 pacid=23145306 polypeptide=Lus10006630 locus=Lus10006630.g ID=Lus10006630.BGIv1.0 annot-version=v1.0
MSTDRESTGSGDEEDLSDMDDNEISSCLNDERQVELKSKIWELMHGQYLKRKREFDNLPPDARKKLKAADARKSEKTGPDGSGDKEKEEKEKEQNKKKAR
EASLSSKINFDAFKKLFGENDGENDGKAAENNEESEKLEENNDGGEDCYFNEEEEYESDRNSEYVDYW

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G19550 zinc ion binding;transcription... Lus10006630
[exp]
0 1
AT5G39760 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, ho... Lus10005242
[exp]
1.4 0.8852
AT3G53540 unknown protein Lus10025295
[exp]
3.2 0.8074
AT5G39760 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, ho... Lus10005244
[exp]
3.7 0.8555
AT1G47200 WPP2 WPP domain protein 2 (.1) Lus10009747
[exp]
6.7 0.8427
AT5G24318 O-Glycosyl hydrolases family 1... Lus10016032
[exp]
10.6 0.8119
AT1G08650 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylas... Lus10011823
[exp]
13.1 0.7091
AT3G51850 CPK13 calcium-dependent protein kina... Lus10002482
[exp]
13.2 0.7988
AT1G07090 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, ... Lus10022023
[exp]
14.3 0.8019
AT4G20040 Pectin lyase-like superfamily ... Lus10038369
[exp]
14.5 0.7630
AT1G21980 ATPIPK1, ATPIP5... phosphatidylinositol-4-phospha... Lus10018200
[exp]
14.7 0.7417

Lus10006630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.