Plant FIBer expression Database

Lus10006631 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039390
[exp]
585 / 0 ND 41 / 0.002
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G159200
[exp]
88 / 1e-17 AT4G14650 56 / 9e-08 unknown protein
Potri.010G081000
[exp]
76 / 5e-14 AT4G14650 55 / 2e-07 unknown protein
PFAM info
Representative CDS sequence
>Lus10006631 pacid=23145316 polypeptide=Lus10006631 locus=Lus10006631.g ID=Lus10006631.BGIv1.0 annot-version=v1.0
ATGGTGGCTGAAGATGCAGGAGAAGAAAATTCTAACACAAAGATTGAAGGAACTCACCCAAAATCTGTGCAAGAAGCTGATGAACAAGAAGGTACAAGAG
GACACTTTGTTGATCAAAGTGAAGGAAGTGATGAAAATGGAGGAAGAATGTTAGGTTCTAAGGATCCAAAGGAAGAGGAGGGAACAGAGGCCCAGAATCG
AGATGGAAAAGTTGTTTCAGAGCAAGAGGATGATAGGCTGGAGGGCCAAGTTCATGATCCTATGCCTGTCGAATCCGAGGAACCAAAGCCCAAATACGAG
GAAGAAAGAAGTAAAGACAGTAATCCTCAACTAAAAACCGTGAGGCAACAAACAGAAGAACACAAGTCTGATTCTATGGAACAACCAGAATCTAGTAAGC
CAGAGGAGGTGGAGGAGACGTTGAGCTCAGGTTCAACTGTTATATCCCATGCACATGATGAGCAAGAACATCAAGGTTCTGATGAAGTAGAATTAAACCT
GAATAAAAACCAAGGCACCTCAACTTCCACCAATATGGAGAGGCTGGAGAGCCAAGTTCACGATCCTTTGCTTGCCGAATCTAAGAAGCCAAACCTGGAC
TACAATGGAGATAGTAGCAAAGGTAGCAATTCTCAACCGAATTTATTGAGGGAAGAGATGGAAGAACGCATATCTGATTTAGATGAACATCAGGAACTGC
ATAAGCCAGTGGAGGCAGATGTGAGCATAGGATCACCTGTTATGCCCCCTTCACACGATGGGCTACAAAATCATGGCTCTGATGAAGCAGAATTGAAACA
GAACGAGAATGAAGGGAACTCAACTTCCACCATCATGTCCCCTTCAATCAATGAAGAAGATCCGGATTCTGAAGAACTGGAATTGAACCTGAATAAAGAT
GAAGGCAGCATAACAAAATCACGATTTTCTCATACTACTGATTCTGAGAATAATCATCATTTTGATGTTCATACATCTTATGCTCATGATGAATCTGTCA
TATCTGAGAATCTTAAGGATGGATTTTCGGCGAATGAACTGATCATATCTTTACCCAGTAAGGTATCCATCAAAGTTGTATCTCAAGCTGCAGTTGAAAA
TGGAACTGATCATCATGAGCCGGACAGTGAGCAGATGAATTATGACCGTTGCTTGCAGTCGCAAGCAGAAGCCAATCTGATGGCTAAACACGACCGTTCA
AATAGTGATGATGAAGAAAGATCTAGTAACCAAGCAGGTCACAAGATTCATGGAGAAGAAATCAGCCACCTAGAGGCTTCAAAACCTGAAGCAAACCTGA
TTTTGGCCTCACTACCACCACCACCTGAAGCCATGTTAGCAGCCAAAGAATCTGACGAAGGGGAAAACAATCAAGATCAGCAATCAGAAAATGGGTCACA
ACTTCATTGCTCGTTTGTGCCTGTATCAAAGAGCAACGGTTCCCTGACTGAGGGTGCTTCTAAAGAAGAGAAGATGGAACTTCTTCAATTGGGGATTCCA
ACCGTAGATGGTCAAAACAAAGAACATGAACTGGCACAGATTGAAAATGGAAAAGAAGAATTGTTGCAAGAGTCGTTCCCTGACCAAGAGAAAGAGTCTG
CAACGGAGTCTGAAGATTCTCCACAAGACATCAGTAGCAACTCCAGCTGGGAATTTAACACAGGAAACAGCTCCGAGTTCTTCGTCGATATGGCTCCAAC
TTTCATCGCCGATAAGTTGACTGGTGAGGAAGAGCCTGTTCCATTTCCAATCCAGCTTCCGGCAGCAGTTACGGTGAGAGAGGAAGAGACCGACCAGCAA
TCGGGAAGACTAAGCACCAACTCAGCTGCTGAAAACTTGACCGCCAATTCCCATATGCAGAAATCCCCGAGCTTCAACTTCGATCTTCATCTCCGGCGAC
GGAGCACCGAAGAGTACTCCGATCAAACTCCCCTCCTCCGGAAATACCAGGACAAGATCACGATCACATCTATATCTAAAGAAACTAAGGCTTTCGAAAT
GCCCAGTCGCGAAGAGGCGATGTCAGTGGAAGAGAAAGCCAGTCAACCCCTAGAGAAGAGTGATTCAGAGAAGCCGTTGATCCTAGGGTGGATGAAGGAA
GACAATAATAATGAAGTCCATTGCCAAAAGAAAGCATTGGAAGAGGAAATGCCGAGATCGGTTCCGTCTGAAGAGAAAGAAAAGCAGTACAGCCGGCGCC
GATCGACATTCTTCAGCAACTGTTTGTGCTGCACGGCAACAAACGCCATCAGTTGA
AA sequence
>Lus10006631 pacid=23145316 polypeptide=Lus10006631 locus=Lus10006631.g ID=Lus10006631.BGIv1.0 annot-version=v1.0
MVAEDAGEENSNTKIEGTHPKSVQEADEQEGTRGHFVDQSEGSDENGGRMLGSKDPKEEEGTEAQNRDGKVVSEQEDDRLEGQVHDPMPVESEEPKPKYE
EERSKDSNPQLKTVRQQTEEHKSDSMEQPESSKPEEVEETLSSGSTVISHAHDEQEHQGSDEVELNLNKNQGTSTSTNMERLESQVHDPLLAESKKPNLD
YNGDSSKGSNSQPNLLREEMEERISDLDEHQELHKPVEADVSIGSPVMPPSHDGLQNHGSDEAELKQNENEGNSTSTIMSPSINEEDPDSEELELNLNKD
EGSITKSRFSHTTDSENNHHFDVHTSYAHDESVISENLKDGFSANELIISLPSKVSIKVVSQAAVENGTDHHEPDSEQMNYDRCLQSQAEANLMAKHDRS
NSDDEERSSNQAGHKIHGEEISHLEASKPEANLILASLPPPPEAMLAAKESDEGENNQDQQSENGSQLHCSFVPVSKSNGSLTEGASKEEKMELLQLGIP
TVDGQNKEHELAQIENGKEELLQESFPDQEKESATESEDSPQDISSNSSWEFNTGNSSEFFVDMAPTFIADKLTGEEEPVPFPIQLPAAVTVREEETDQQ
SGRLSTNSAAENLTANSHMQKSPSFNFDLHLRRRSTEEYSDQTPLLRKYQDKITITSISKETKAFEMPSREEAMSVEEKASQPLEKSDSEKPLILGWMKE
DNNNEVHCQKKALEEEMPRSVPSEEKEKQYSRRRSTFFSNCLCCTATNAIS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10006631
[exp]
0 1
AT1G21740 Protein of unknown function (D... Lus10029683
[exp]
1.7 0.8417
Lus10039390
[exp]
5.7 0.7800
AT4G18340 Glycosyl hydrolase superfamily... Lus10023309
[exp]
7.7 0.7772
AT5G60440 MADS AGL62 AGAMOUS-like 62 (.1) Lus10025872
[exp]
8.5 0.7769
AT3G52525 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAM... Lus10016978
[exp]
9.9 0.7848
AT5G13980 Glycosyl hydrolase family 38 p... Lus10041516
[exp]
10.5 0.7346
AT1G03840 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fin... Lus10039869
[exp]
11.4 0.7371
AT4G18340 Glycosyl hydrolase superfamily... Lus10038501
[exp]
12.5 0.7790
AT3G25610 ATPase E1-E2 type family prote... Lus10035069
[exp]
16.4 0.6925
AT2G03640 Nuclear transport factor 2 (NT... Lus10026668
[exp]
17.0 0.7126

Lus10006631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.