Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22960 897 / 0 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT5G52920 373 / 2e-122 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT1G32440 371 / 1e-121 PKP3 plastidial pyruvate kinase 3 (.1) AT5G63680 240 / 2e-72 Pyruvate kinase family protein (.1) AT5G08570 238 / 1e-71 Pyruvate kinase family protein (.1) AT3G25960 232 / 2e-69 Pyruvate kinase family protein (.1) AT3G55650 232 / 2e-69 Pyruvate kinase family protein (.1) AT3G04050 231 / 6e-69 Pyruvate kinase family protein (.1) AT4G26390 230 / 1e-68 Pyruvate kinase family protein (.1) AT5G56350 226 / 5e-67 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039396 [exp] 1129 / 0 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 591 / 0 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 574 / 0 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012445 [exp] 467 / 2e-158 AT3G22960 479 / 7e-163 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033757 [exp] 418 / 4e-141 AT3G22960 429 / 5e-145 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10000672 [exp] 366 / 8e-120 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10011057 [exp] 363 / 5e-118 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039316 [exp] 358 / 3e-117 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10003439 [exp] 243 / 2e-73 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G159700 [exp] 962 / 0 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.010G080700 [exp] 944 / 0 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 598 / 0 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 597 / 0 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.012G034000 [exp] 375 / 4e-123 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.001G145300 [exp] 360 / 9e-118 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.003G088700 [exp] 355 / 8e-116 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.010G254900 [exp] 244 / 6e-74 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 231 / 6e-69 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 231 / 7e-69 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10006633 pacid=23145325 polypeptide=Lus10006633 locus=Lus10006633.g ID=Lus10006633.BGIv1.0 annot-version=v1.0 ATGTCTTTTCAGTCGCTTCATTTCTTCACTCCCTCCTCTACCACCTGCCCAAACGTCACCGTCCCCAAGCCTTCACTTCCTGCTCTAAATCGCCGTTTGA GGTTTGCTATCTCTCCCAGGACCTTCTCCGTCAGAGCCGTTTCCGCTTCTTCAGATCTAAATCCTCCCTCGCCGCATGTGGTTATTGCCGATAATGGAGC CGGAACCAGTGTTGTCGCGCCGCCGGATTCCAGCTCGATTGATGTGGATAAGGTGACTGAAGCGGAGTTGAAGGAGAATGGATTCCGGAGCAGTAGGAGG ACGAAGCTGGTGTGCACGATCGGCCCCAATACCTGCGGTTCCGAGCAGCTCGAGACGTTGGCCGTCGGGGGTATGAACGTGGCGAGGATCAATATGTGCC ACGGGACCAGGGAGTGGCATAAGCGAGTGATAGAGCGGGTTAGGAAGTTGAACGAGGAGAAGGGATATGCGGTTGCCATTATGATGGATACCGAAGGGAG TGAGATTCATATGGGAGATCTTGGCGGCGCTCCCTCCGCCAAAGCTGAGGATGGCGAAGTCTGGACTTTCAGTGTTAGAGCTTACGATGTAAATCGCCCT GAACGCACCATTACTGTCAGTTATGATGGCTTTGCGGAAGATGTGAAAGTTGGGGACGAGTTACTTGTCGATGGTGGCATGGTTAGGTTCGAGGTGATCG AAAAAATTGGACCTGATGTCAAATGTACGTGTACTGATCCTGGACTATTGTTGCCGCGTGCTAACTTGACTTTCTGGAGGGACGGAAGCTTGGTACGAGA ACGTAATGCAATGCTTCCTACAATTTCCCCCAAGGATTGGCTGGACATTGATTTTGGAATTGCGGAGTCTGTTGATTTCATTGCAGTATCATTTGTGAAG TCAGCTGAAGTGATAAACCATCTTAAGAGCTATATTGCTGCACGCTCTCGTGATAATGACATAGCAGTCATAGCAAAGATAGAGAGTATTGATTCATTGA AGAACTTGGAAGAGATCATTCAAGCATCAGATGGAGCTATGGTAGCTAGAGGAGATCTGGGTGCTCAGATACCATTAGAACAGGTACCATCAGCCCAGCA AAAGATTGTTCAGATGTGCAGGCAGCTGAACAAGCCTGTGATTGTTGCATCTCAACTGCTTGAATCTATGATCGAATATCCTACACCTACAAGAGCAGAG GTGGCCGATGTCTCAGAAGCTGTTAGGCAAAGGGCCGATGCTTTGATGCTCTCTGGAGAATCGGCTATGGGTCAATTCCCAGACAAAGCGCTGGCTGTCC TAAGGAGTGTGAGTGTAAGAATTGAGAAGTGGCGGAGAGAAGAAAAGCATCATGAAGCTATGGAACTCTCAGATGTTGGGTCATCATTCTCTGACCGTAT TTCGGAAGAGATTTGTAATTCTGCTGCTAAGATGGCAAACAATCTGGAGGTGGATGCCCTATTCGTGTACACAAAGACTGGTCATATGGCATCTCTACTG TCACGGTGCCGACCTGATTGCCCAATCTTTGCATTCACAACATCAACATCAGTAAGGAGAAGGCTGAACCTTCAGTGGGGGCTCATACCTTTCCGGCTGA GCTTGTCCGATGACATGGAAAGCGACCTCAGCAGAACCTTCTCGTTGCTCAAGGCTAGAGGAATGATCAAATCCGGGGACCTTGTTATCGCTGTCTCAGA CATGCTGCAGTCAATCCAAGTCATGAATGTACCTTAA
AA sequence Show only first row Show all	>Lus10006633 pacid=23145325 polypeptide=Lus10006633 locus=Lus10006633.g ID=Lus10006633.BGIv1.0 annot-version=v1.0 MSFQSLHFFTPSSTTCPNVTVPKPSLPALNRRLRFAISPRTFSVRAVSASSDLNPPSPHVVIADNGAGTSVVAPPDSSSIDVDKVTEAELKENGFRSSRR TKLVCTIGPNTCGSEQLETLAVGGMNVARINMCHGTREWHKRVIERVRKLNEEKGYAVAIMMDTEGSEIHMGDLGGAPSAKAEDGEVWTFSVRAYDVNRP ERTITVSYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCTCTDPGLLLPRANLTFWRDGSLVRERNAMLPTISPKDWLDIDFGIAESVDFIAVSFVK SAEVINHLKSYIAARSRDNDIAVIAKIESIDSLKNLEEIIQASDGAMVARGDLGAQIPLEQVPSAQQKIVQMCRQLNKPVIVASQLLESMIEYPTPTRAE VADVSEAVRQRADALMLSGESAMGQFPDKALAVLRSVSVRIEKWRREEKHHEAMELSDVGSSFSDRISEEICNSAAKMANNLEVDALFVYTKTGHMASLL SRCRPDCPIFAFTTSTSVRRRLNLQWGLIPFRLSLSDDMESDLSRTFSLLKARGMIKSGDLVIAVSDMLQSIQVMNVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10006633 [exp]	0	1
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10010845 [exp]	2.6	0.9256
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	2.8	0.9309
AT2G32415			Polynucleotidyl transferase, r...		Lus10015114 [exp]	4.0	0.9302
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10017153 [exp]	4.7	0.9364
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	6.3	0.9251
AT1G23170			Protein of unknown function DU...		Lus10021774 [exp]	9.2	0.9282
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	10.2	0.9309
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	10.8	0.9249
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	11.2	0.9286
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	12.2	0.9198

Compare expression of checked genes

Lus10006633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.